Carmil2 (capping protein regulator and myosin 1 linker 2) - Rat Genome Database

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Gene: Carmil2 (capping protein regulator and myosin 1 linker 2) Ictidomys tridecemlineatus
Analyze
Symbol: Carmil2
Name: capping protein regulator and myosin 1 linker 2
RGD ID: 12646778
Description: ENCODES a protein that exhibits phospholipid binding (inferred); protein-containing complex binding (inferred); INVOLVED IN establishment of protein localization (ortholog); homeostasis of number of cells (ortholog); positive regulation of interferon-gamma production (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); chromosome 16q22 deletion syndrome (ortholog); combined immunodeficiency (ortholog); FOUND IN cell-cell junction (ortholog); F-actin capping protein complex (ortholog); immunological synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: capping protein, Arp2/3 and myosin-I linker protein 2; LOW QUALITY PROTEIN: capping protein, Arp2/3 and myosin-I linker protein 2; LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 16C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,539,934 - 41,553,241 (-)NCBI
SpeTri2.0NW_00493647518,036,233 - 18,049,144 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Carmil2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,539,934 - 41,553,241 (-)NCBI
SpeTri2.0NW_00493647518,036,233 - 18,049,144 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CARMIL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,645,144 - 67,657,569 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1667,644,988 - 67,657,569 (+)EnsemblGRCh38hg38GRCh38
GRCh371667,679,047 - 67,691,472 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,236,531 - 66,248,973 (+)NCBINCBI36hg18NCBI36
Celera1652,187,520 - 52,199,962 (+)NCBI
Cytogenetic Map16q22.1NCBI
HuRef1653,551,938 - 53,564,384 (+)NCBIHuRef
CHM1_11669,086,723 - 69,099,185 (+)NCBICHM1_1
Carmil2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,412,642 - 106,424,827 (+)NCBIGRCm39mm39
GRCm39 Ensembl8106,412,906 - 106,424,819 (+)Ensembl
GRCm388105,686,010 - 105,698,195 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,686,274 - 105,698,187 (+)EnsemblGRCm38mm10GRCm38
MGSCv378108,214,806 - 108,222,065 (+)NCBIGRCm37mm9NCBIm37
MGSCv368108,580,035 - 108,587,294 (+)NCBImm8
Celera8109,915,749 - 109,923,083 (+)NCBICelera
Cytogenetic Map8D3NCBI
Carmil2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21933,571,255 - 33,586,783 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1933,574,257 - 33,586,965 (+)Ensembl
Rnor_6.01937,652,383 - 37,665,333 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,652,969 - 37,668,019 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,519,170 - 48,532,037 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,515,397 - 35,530,595 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1933,001,781 - 33,014,730 (+)NCBICelera
Cytogenetic Map19q12NCBI
Carmil2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,025,460 - 9,037,580 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,025,409 - 9,037,942 (-)NCBIChiLan1.0ChiLan1.0
CARMIL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11667,378,283 - 67,390,760 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,378,353 - 67,390,709 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01647,989,040 - 48,001,455 (+)NCBIMhudiblu_PPA_v0panPan3
CARMIL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,792,683 - 81,804,274 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,792,155 - 81,804,152 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,782,441 - 81,794,868 (-)NCBI
ROS_Cfam_1.0582,227,854 - 82,240,296 (-)NCBI
ROS_Cfam_1.0 Ensembl582,227,874 - 82,239,343 (-)Ensembl
UMICH_Zoey_3.1582,054,178 - 82,066,594 (-)NCBI
UNSW_CanFamBas_1.0581,735,709 - 81,748,107 (-)NCBI
UU_Cfam_GSD_1.0582,378,251 - 82,390,674 (-)NCBI
CARMIL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,264,320 - 28,279,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,265,130 - 28,277,649 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,490,372 - 25,498,577 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CARMIL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,787,069 - 59,801,615 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl559,787,120 - 59,801,122 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604722,540,823 - 22,553,913 (-)NCBIVero_WHO_p1.0
Carmil2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474618,692,179 - 18,704,952 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040278886   ⟹   XP_040134820
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934941,539,934 - 41,553,240 (-)NCBI
RefSeq Acc Id: XM_040278887   ⟹   XP_040134821
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934941,539,934 - 41,553,240 (-)NCBI
RefSeq Acc Id: XM_040278888   ⟹   XP_040134822
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934941,539,934 - 41,553,240 (-)NCBI
RefSeq Acc Id: XM_040278889   ⟹   XP_040134823
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934941,539,934 - 41,553,241 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040134820 (Get FASTA)   NCBI Sequence Viewer  
  XP_040134821 (Get FASTA)   NCBI Sequence Viewer  
  XP_040134822 (Get FASTA)   NCBI Sequence Viewer  
  XP_040134823 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_040134823   ⟸   XM_040278889
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040134821   ⟸   XM_040278887
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040134822   ⟸   XM_040278888
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040134820   ⟸   XM_040278886
- Peptide Label: isoform X1
Protein Domains
Carm_PH   CARMIL_C


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016451 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000014727 UniProtKB/TrEMBL
  ENSSTOP00000025703 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016455 UniProtKB/TrEMBL
  ENSSTOT00000040806 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro CARMIL2 UniProtKB/TrEMBL
  CARMIL_C UniProtKB/TrEMBL
  CARMIL_PH UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
NCBI Gene Carmil2 ENTREZGENE
PANTHER PTHR24112:SF32 UniProtKB/TrEMBL
Pfam Carm_PH UniProtKB/TrEMBL
  CARMIL_C UniProtKB/TrEMBL
  LRR_6 UniProtKB/TrEMBL
UniProt A0A287CWP8_ICTTR UniProtKB/TrEMBL
  I3MRK3_ICTTR UniProtKB/TrEMBL