Rps5 (ribosomal protein S5) - Rat Genome Database

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Gene: Rps5 (ribosomal protein S5) Ictidomys tridecemlineatus
Analyze
Symbol: Rps5
Name: ribosomal protein S5
RGD ID: 12646758
Description: ENCODES a protein that exhibits mRNA binding (inferred); RNA binding (inferred); rRNA binding (inferred); INVOLVED IN regulation of translational fidelity (ortholog); ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosolic ribosome (ortholog); cytosolic small ribosomal subunit (ortholog); small-subunit processome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118218,104,320 - 218,109,406 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049370629,902 - 15,718 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493706210,007 - 15,042 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rps5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118218,104,320 - 218,109,406 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049370629,902 - 15,718 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493706210,007 - 15,042 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381958,387,269 - 58,394,804 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1958,386,400 - 58,394,806 (+)EnsemblGRCh38hg38GRCh38
GRCh371958,898,636 - 58,906,171 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,590,448 - 63,597,983 (+)NCBINCBI36Build 36hg18NCBI36
Build 341963,590,466 - 63,597,982NCBI
Celera1955,942,629 - 55,950,164 (+)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1955,207,846 - 55,215,380 (+)NCBIHuRef
CHM1_11958,892,560 - 58,900,109 (+)NCBICHM1_1
T2T-CHM13v2.01961,483,659 - 61,491,195 (+)NCBIT2T-CHM13v2.0
Rps5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,656,223 - 12,660,613 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl712,656,217 - 12,660,613 (+)EnsemblGRCm39 Ensembl
GRCm38712,922,311 - 12,926,686 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl712,922,290 - 12,926,686 (+)EnsemblGRCm38mm10GRCm38
MGSCv37713,507,660 - 13,512,035 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36711,822,516 - 11,838,015 (+)NCBIMGSCv36mm8
Celera710,547,262 - 10,551,638 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map77.69NCBI
Rps5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8182,610,965 - 82,615,262 (+)NCBIGRCr8
mRatBN7.2173,538,776 - 73,543,073 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl173,538,776 - 73,543,073 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx178,919,602 - 78,923,902 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0187,483,951 - 87,488,251 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0180,674,674 - 80,678,974 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0165,660,470 - 65,664,767 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,660,470 - 65,664,767 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0166,471,608 - 66,475,905 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,828,981 - 72,833,277 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1172,907,117 - 72,911,635 (+)NCBI
Celera160,295,732 - 60,300,029 (-)NCBICelera
Cytogenetic Map1q21NCBI
Rps5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555841,036,044 - 1,041,506 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555841,036,044 - 1,040,451 (+)NCBIChiLan1.0ChiLan1.0
RPS5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22064,658,449 - 64,671,398 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11966,446,404 - 66,459,269 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01955,396,001 - 55,403,624 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11964,219,991 - 64,228,173 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1964,218,986 - 64,228,173 (+)Ensemblpanpan1.1panPan2
RPS5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,558,769 - 99,564,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl199,558,763 - 99,564,332 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,953,814 - 99,959,453 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01100,199,463 - 100,205,112 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1100,199,459 - 100,205,037 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1199,844,961 - 99,850,599 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0199,557,359 - 99,562,993 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01100,312,457 - 100,318,097 (-)NCBIUU_Cfam_GSD_1.0
RPS5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl662,967,994 - 62,974,350 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1662,967,955 - 62,974,353 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2657,686,364 - 57,692,212 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,662,539 - 50,670,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl650,663,431 - 50,670,230 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660453,961,962 - 3,969,821 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624832177,463 - 184,373 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624832177,463 - 184,459 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000005924   ⟹   ENSSTOP00000005301
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049370629,902 - 15,718 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000033933   ⟹   ENSSTOP00000025184
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049370629,902 - 15,718 (+)Ensembl
RefSeq Acc Id: XM_005342397   ⟹   XP_005342454
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118218,104,320 - 218,109,406 (-)NCBI
SpeTri2.0NW_00493706210,007 - 15,042 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040290855   ⟹   XP_040146789
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118218,104,320 - 218,108,979 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005342454 (Get FASTA)   NCBI Sequence Viewer  
  XP_040146789 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005301.2
  ENSSTOP00000025184.1
GenBank Protein KAG3280941 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005342454   ⟸   XM_005342397
- Peptide Label: isoform X2
- UniProtKB: I3M6Y6 (UniProtKB/TrEMBL),   A0A287CV79 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040146789   ⟸   XM_040290855
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000005301   ⟸   ENSSTOT00000005924
RefSeq Acc Id: ENSSTOP00000025184   ⟸   ENSSTOT00000033933
Protein Domains
Small ribosomal subunit protein uS7


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005935 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005924.3 UniProtKB/TrEMBL
  ENSSTOT00000033933.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.455.10 UniProtKB/TrEMBL
InterPro Ribosomal_S5/S7 UniProtKB/TrEMBL
  Ribosomal_S5/S7_euk/arc UniProtKB/TrEMBL
  Ribosomal_S7_CS UniProtKB/TrEMBL
  Ribosomal_S7_dom UniProtKB/TrEMBL
  Ribosomal_S7_dom_sf UniProtKB/TrEMBL
NCBI Gene Rps5 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S5 UniProtKB/TrEMBL
  PTHR11205 UniProtKB/TrEMBL
Pfam Ribosomal_S7 UniProtKB/TrEMBL
PIRSF RPS7p_RPS7a_RPS5e_RPS7o UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S7 UniProtKB/TrEMBL
Superfamily-SCOP SSF47973 UniProtKB/TrEMBL
UniProt A0A287CV79 ENTREZGENE, UniProtKB/TrEMBL
  I3M6Y6 ENTREZGENE, UniProtKB/TrEMBL