Slc25a23 (solute carrier family 25 member 23) - Rat Genome Database

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Gene: Slc25a23 (solute carrier family 25 member 23) Ictidomys tridecemlineatus
Analyze
Symbol: Slc25a23
Name: solute carrier family 25 member 23
RGD ID: 12646473
Description: ENCODES a protein that exhibits adenine nucleotide transmembrane transporter activity (inferred); ADP:phosphate antiporter activity (inferred); antiporter activity (inferred); INVOLVED IN adenine nucleotide transport (ortholog); cellular response to calcium ion (ortholog); regulation of cellular respiration (ortholog); ASSOCIATED WITH genetic disease (ortholog); mucolipidosis type IV (ortholog); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium-binding mitochondrial carrier protein SCaMC-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,028,801 - 214,045,845 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,792,778 - 3,808,593 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,792,760 - 3,804,788 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc25a23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,028,801 - 214,045,845 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,792,778 - 3,808,593 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,792,760 - 3,804,788 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38196,436,081 - 6,459,792 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl196,436,079 - 6,465,203 (-)EnsemblGRCh38hg38GRCh38
GRCh37196,440,075 - 6,459,803 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36196,391,075 - 6,410,781 (-)NCBINCBI36Build 36hg18NCBI36
Build 34196,391,074 - 6,410,781NCBI
Celera196,379,913 - 6,399,607 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef196,200,943 - 6,222,762 (-)NCBIHuRef
CHM1_1196,439,650 - 6,459,340 (-)NCBICHM1_1
T2T-CHM13v2.0196,425,594 - 6,449,293 (-)NCBIT2T-CHM13v2.0
Slc25a23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,350,711 - 57,366,863 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,350,711 - 57,366,863 (-)EnsemblGRCm39 Ensembl
GRCm381757,043,711 - 57,059,909 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1757,043,711 - 57,059,863 (-)EnsemblGRCm38mm10GRCm38
MGSCv371757,183,134 - 57,199,286 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,728,621 - 56,745,010 (-)NCBIMGSCv36mm8
Celera1761,391,640 - 61,407,783 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.64NCBI
Slc25a23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,969,633 - 1,985,365 (-)NCBIGRCr8
mRatBN7.291,882,636 - 1,898,369 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,882,621 - 1,898,561 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,318,184 - 2,332,116 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,667,541 - 7,681,473 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,623,402 - 6,637,334 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.099,987,988 - 10,003,599 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl99,988,055 - 10,001,962 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.098,988,689 - 9,004,249 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,619,249 - 6,633,160 (+)NCBICelera
Cytogenetic Map9q11NCBI
Slc25a23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554953,155,224 - 3,170,369 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554953,155,024 - 3,171,279 (+)NCBIChiLan1.0ChiLan1.0
SLC25A23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,849,590 - 10,867,823 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11910,075,652 - 10,093,741 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,474,538 - 5,487,364 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1196,388,937 - 6,410,481 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl196,388,937 - 6,410,480 (-)Ensemblpanpan1.1panPan2
SLC25A23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12053,722,841 - 53,736,205 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2053,722,320 - 53,733,331 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,469,862 - 53,483,134 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,376,787 - 54,390,281 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,376,781 - 54,390,615 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,443,639 - 53,456,913 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,892,079 - 53,905,333 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,121,061 - 54,134,550 (+)NCBIUU_Cfam_GSD_1.0
SLC25A23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl272,625,583 - 72,641,791 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1272,625,544 - 72,643,572 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2272,958,959 - 72,965,057 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.166,042,186 - 6,063,969 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl66,044,516 - 6,063,842 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660811,934,087 - 1,959,948 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,559,813 - 3,572,395 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248283,558,034 - 3,572,426 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000002387   ⟹   ENSSTOP00000002134
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365883,792,778 - 3,808,593 (-)Ensembl
RefSeq Acc Id: XM_021730936   ⟹   XP_021586611
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118214,029,996 - 214,042,021 (+)NCBI
SpeTri2.0NW_0049365883,792,760 - 3,804,788 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040290571   ⟹   XP_040146505
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118214,029,996 - 214,043,884 (+)NCBI
RefSeq Acc Id: XM_040290572   ⟹   XP_040146506
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118214,029,996 - 214,045,845 (+)NCBI
RefSeq Acc Id: XM_040290573   ⟹   XP_040146507
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118214,029,996 - 214,042,023 (+)NCBI
RefSeq Acc Id: XM_040290574   ⟹   XP_040146508
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118214,028,801 - 214,042,023 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021586611 (Get FASTA)   NCBI Sequence Viewer  
  XP_040146505 (Get FASTA)   NCBI Sequence Viewer  
  XP_040146506 (Get FASTA)   NCBI Sequence Viewer  
  XP_040146507 (Get FASTA)   NCBI Sequence Viewer  
  XP_040146508 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002134.3
GenBank Protein KAG3280593 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021586611   ⟸   XM_021730936
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_040146508   ⟸   XM_040290574
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040146506   ⟸   XM_040290572
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040146505   ⟸   XM_040290571
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040146507   ⟸   XM_040290573
- Peptide Label: isoform X4
RefSeq Acc Id: ENSSTOP00000002134   ⟸   ENSSTOT00000002387
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002387 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002387.3 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
NCBI Gene Slc25a23 ENTREZGENE
PANTHER CALCIUM-BINDING MITOCHONDRIAL CARRIER PROTEIN SCAMC-3 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 UniProtKB/TrEMBL
Pfam EF-hand_5 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/TrEMBL
  Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  SOLCAR UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt I3M0B5_ICTTR UniProtKB/TrEMBL