Cdk8 (cyclin dependent kinase 8) - Rat Genome Database

Name: Cdk8
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cdk8 (cyclin dependent kinase 8) Ictidomys tridecemlineatus

Analyze

Symbol:

Cdk8

Name:

cyclin dependent kinase 8

RGD ID:

12645045

Description:

ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of triglyceride metabolic process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); protein ubiquitination (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH dilated cardiomyopathy (ortholog); Ebstein anomaly (ortholog); genetic disease (ortholog); FOUND IN CKM complex (ortholog); cyclin-dependent protein kinase holoenzyme complex (ortholog); mediator complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cyclin dependent kinase 8, transcript variant X1; cyclin dependent kinase 8, transcript variant X10; cyclin dependent kinase 8, transcript variant X2; cyclin dependent kinase 8, transcript variant X6; cyclin dependent kinase 8, transcript variant X7; cyclin dependent kinase 8, transcript variant X8; cyclin dependent kinase 8, transcript variant X9; cyclin-dependent kinase 8

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	114,926,309 - 115,028,565 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936948	91,578 - 236,051 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

dilated cardiomyopathy (ISO)

Ebstein anomaly (ISO)

genetic disease (ISO)

INTELLECTUAL DEVELOPMENTAL DISORDER WITH HYPOTONIA AND BEHAVIORAL ABNORMALITIES (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of triglyceride metabolic process (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

protein ubiquitination (ISO)

Cellular Component

CKM complex (ISO)

cyclin-dependent protein kinase holoenzyme complex (ISO)

mediator complex (ISO)

nucleolus (ISO)

nucleus (IEA)

protein-containing complex (ISO)

ubiquitin ligase complex (ISO)

Molecular Function

ATP binding (IEA)

protein binding (ISO)

protein kinase activity (IEA)

protein serine/threonine kinase activity (IEA)

ubiquitin protein ligase activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Cdk8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	114,926,309 - 115,028,565 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936948	91,578 - 236,051 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDK8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	26,254,129 - 26,405,238 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	26,254,104 - 26,420,982 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	26,828,266 - 26,979,375 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	25,726,756 - 25,876,569 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	25,726,755 - 25,876,569	NCBI
Celera	13	7,896,857 - 8,046,682 (+)	NCBI		Celera
Cytogenetic Map	13	q12.13	NCBI
HuRef	13	7,646,374 - 7,796,038 (+)	NCBI		HuRef
CHM1_1	13	26,796,796 - 26,946,621 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	25,467,904 - 25,619,002 (+)	NCBI		T2T-CHM13v2.0

Cdk8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	146,167,432 - 146,239,684 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	146,168,040 - 146,239,684 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	146,230,795 - 146,302,874 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	146,231,230 - 146,302,874 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	147,043,251 - 147,114,450 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	146,535,913 - 146,607,053 (+)	NCBI		MGSCv36	mm8
Celera	5	144,210,649 - 144,281,842 (+)	NCBI		Celera
Cytogenetic Map	5	G3	NCBI
cM Map	5	85.19	NCBI

Cdk8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	13,851,024 - 13,919,017 (-)	NCBI		GRCr8
mRatBN7.2	12	8,737,198 - 8,805,026 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	8,737,262 - 8,804,177 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	9,534,947 - 9,601,599 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	10,158,140 - 10,224,798 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	9,181,585 - 9,248,239 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	10,496,273 - 10,561,335 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	12	12,597,402 - 12,663,842 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	9,215,964 - 9,254,015 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	10,565,691 - 10,631,673 (-)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

Cdk8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955497	5,781,237 - 5,908,374 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955497	5,781,237 - 5,908,072 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDK8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	25,853,105 - 26,004,531 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	16,962,029 - 17,112,677 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	7,546,922 - 7,698,079 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	25,895,353 - 26,046,120 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	25,895,705 - 26,046,120 (+)	Ensembl	panpan1.1		panPan2

CDK8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	13,043,949 - 13,179,752 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	13,045,343 - 13,179,656 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	13,114,192 - 13,250,035 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	13,179,325 - 13,315,182 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	13,180,701 - 13,315,567 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	13,063,086 - 13,198,906 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	13,055,645 - 13,191,566 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	13,106,469 - 13,242,317 (-)	NCBI		UU_Cfam_GSD_1.0

CDK8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	4,054,442 - 4,161,481 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	4,054,442 - 4,161,501 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	3,493,422 - 3,545,124 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDK8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	5,505,532 - 5,652,527 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	5,505,625 - 5,651,366 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	38,774,603 - 38,922,173 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdk8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	12,157,892 - 12,325,081 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624776	12,114,277 - 12,324,481 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005342040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005342041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013366050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013366052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040281267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040281268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040281269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002483081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002483082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002483083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005342040 ⟹ XP_005342097

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	114,926,314 - 115,028,565 (+)	NCBI
SpeTri2.0	NW_004936948	91,578 - 193,676 (+)	NCBI

Sequence:

show sequence

CCCGCCCTCCTCCTCTGTGAGGAGGTACCGGCTGTTGTGCGGTGCTGCCTTTCTGTTTGAGTGT
ATGGGAGAGTGAGTGAGTGAGTGAGTGTGAGCGCGCGTGTGTGTGAGAGGGTGAAGAGTGAGTG
CGTGTGTGAGAGGAAGAGAGCCCTCCGTGGCCGCTCCGCCGCTCCACCGCAGTGGGAGCAGGAC
GCGCGGCCGGAAAGAGCAGGGGTGCCGGCGCCCGGGGAGCCCGAGGGGACAAGGGCAGAGACAC
TCGCTCCCCACCCCCAGCTCTCGTCCCTTGGCTCTCCTTCGCGCAGGGGGAGCCTTTCCGTCCT
CCCCTGGCCGGCCTCTGCCCCGCTGCTCCCCTGGATGTCCCTGGCGCTCTCTCGGGGCCTCCTG
CTCTTGCTGCATCAGTCGGGCTGGTGCTGCGGCCGGCGGGTGTAGAGCGGGCGGGTTCCCGGGG
GCTGCGGCTGCCCGAGCTTCCCCGGTCCCCACCCCGACCCCCCGGCCCCCCGACCCAGCTCCCC
GGCCTCTGAGGCTGTGACAATGGACTATGACTTTAAAGTGAAGCTGAGCAGCGAGCGGGAGCGG
GTCGAGGACCTGTTTGAATACGAGGGCTGCAAAGTTGGCCGAGGCACTTATGGTCACGTCTACA
AAGCCAAGAGGAAAGATGGGAAGGATGATAAAGACTATGCTCTAAAACAAATAGAAGGAACTGG
GATCTCTATGTCGGCATGTAGAGAAATAGCATTACTTCGAGAGCTTAAACATCCAAATGTCATC
TCTCTTCAAAAGGTGTTTCTGTCTCATGCTGATCGGAAAGTTTGGCTTCTATTTGATTATGCTG
AACATGATCTCTGGCATATAATCAAGTTTCACAGAGCTTCTAAAGCAAACAAGAAGCCAGTTCA
GTTACCTCGGGGAATGGTGAAGTCACTATTATATCAGATCCTAGATGGAATTCACTACCTGCAT
GCTAACTGGGTGTTGCACAGGGATTTGAAACCTGCTAATATTTTAGTTATGGGTGAAGGTCCTG
AGCGAGGAAGAGTAAAAATTGCTGATATGGGCTTTGCCCGATTATTTAATTCACCTCTGAAGCC
TTTAGCAGATTTGGATCCAGTGGTTGTAACATTCTGGTACCGAGCCCCAGAACTACTTCTTGGA
GCAAGACATTATACCAAAGCTATTGATATTTGGGCTATAGGGTGTATATTTGCAGAACTACTAA
CGTCAGAACCAATATTTCACTGTCGGCAAGAGGACATCAAAACTAGTAATCCTTATCACCATGA
CCAGCTGGACAGAATATTCAATGTAATGGGATTTCCTGCAGATAAAGATTGGGAAGATATAAAA
AAGATGCCCGAACATTCAACATTAATGAAAGATTTCAGAAGAAATACGTACACCAACTGCAGTC
TTATCAAGTATATGGAAAAACACAAAGTAAAACCAGATAGTAAAGCATTCCACTTGCTTCAGAA
GTTGCTTACCATGGACCCAATAAAGCGAATTACCTCAGAACAGGCTATGCAGGATCCCTATTTC
TTAGAAGACCCACTTCCTACATCAGATGTTTTTGCCGGTTGTCAAATCCCTTACCCAAAACGAG
AATTTTTAACAGAAGAAGAACCTGATGACAAAGGAGACAAAAAGAACCAGCAGCAGCAGCAGGG
CAATAACCACACTAATGGAACTGGCCACCCAGGGAACCAAGACAGCAGTCACACACAGGGACCC
CCGTTGAAAAAAGTGAGAGTTGTTCCTCCTACCACTACCTCAGGTGGACTAATCATGACCTCAG
ACTATCAGCGTTCCAATCCACATGCTGCCTATCCCAACCCTGGACCAAGCACATCACAGCCCCA
GAGCAGCATGGGATACTCAGCTACCTCCCAGCAGCCTCCACAGTACTCACATCAGACACATCGG
TACTGAGCTGCGTTGGAATCTTGTCAATGCACTGTTGCTAATGCTGCAGGACTGACTGTGCAGC
TCTCCGCGGGAACCTGGTATGGGCCATGAGAATGTACTGTACAACCACATCTTCAAAATGTCCA
GTAGCCAAGTTCCACCACTTTTCACAGATTGGGGTAGTGGCTTCCAAGTTGTACCTATTTTGGA
GTTAGACTTGAAAAGAAAGTGCTAGCACAGTTTGTGTTATGGATTTGCTACTTCCATAGTTTAC
TTGACATGGTTCAGACTGACCAATGCATTTTTTTCAGTGACAGTCTGTAGCAGTTGAAGCTGTG
AAATGTGCTAGGGACAAGCATTTGTTGTTGTATGTGGTGACTTATTTCAGTGTAACAACATTAT
CTGACCAATAGTACACACAGACACAAAGTTTAACTGGTACTTGAAACATACAGTATGTTAACTC
AACAAAATAACCAAGACTCAAAATGAGATTATTTTGGTACACCTTTCTTTTTAGTGTCTTATCA
GTGGGTTGATTGGTTTTCTACATTAATCAGTGTTTTTTGACCAAGAACATTGCTTGGTTTTTTG
AAAGTACAAAAAGCCACATAGTTTTTTTCCAGAAAGGTTACAAAACTCCCAAAGATTAATTTCC
AACTTCTAAGTTTGTTTTCATTTTCAATCTATGACTTGACTGGTATTAAAGCTGCTATTTGATA
GTAGTAATTAAATATGTTGTCATTGATATAAACCTGTTTGGTTCAGCAAACAAACTAAAATGAT
TGTCATAGACAGTGTTTTATTTTTCCTGTTGGTGTTGCTGATTTGTGAGCATGCTTTAAGATGA
AAAAAGCATGAATGATAACTTCCTTTAAAAGGTGCGGCATCCAATTCAGATATTTTGTCCTGAT
TTTAAAGCTGGTTGGTGTAGTGCTATTAAAAAAATTTTGTTCAGTTAATTTTTCTTTTTTAACT
TGTTCGCACGTTGTTTAGGGTGCCCTTACTTCAGCAAAGGAGAAGGAGTAGGAGAGCCTTAGAA
TTTTTGAGGGAAAAAAAAAACCTATAACATACAATGTACTGTATCAAACTATTTTACATGAATG
ACACAAGTATTCTGAATAAAAAAAATTGAACATTGTTAAAAACAAGGTGTTATGTAATAAATTT
ATTTTTCATAAATCAAAA

hide sequence

RefSeq Acc Id:

XM_005342041 ⟹ XP_005342098

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	114,926,312 - 115,028,565 (+)	NCBI
SpeTri2.0	NW_004936948	91,578 - 193,676 (+)	NCBI

Sequence:

show sequence

CCCGCCCTCCTCCTCTGTGAGGAGGTACCGGCTGTTGTGCGGTGCTGCCTTTCTGTTTGAGTGT
ATGGGAGAGTGAGTGAGTGAGTGAGTGTGAGCGCGCGTGTGTGTGAGAGGGTGAAGAGTGAGTG
CGTGTGTGAGAGGAAGAGAGCCCTCCGTGGCCGCTCCGCCGCTCCACCGCAGTGGGAGCAGGAC
GCGCGGCCGGAAAGAGCAGGGGTGCCGGCGCCCGGGGAGCCCGAGGGGACAAGGGCAGAGACAC
TCGCTCCCCACCCCCAGCTCTCGTCCCTTGGCTCTCCTTCGCGCAGGGGGAGCCTTTCCGTCCT
CCCCTGGCCGGCCTCTGCCCCGCTGCTCCCCTGGATGTCCCTGGCGCTCTCTCGGGGCCTCCTG
CTCTTGCTGCATCAGTCGGGCTGGTGCTGCGGCCGGCGGGTGTAGAGCGGGCGGGTTCCCGGGG
GCTGCGGCTGCCCGAGCTTCCCCGGTCCCCACCCCGACCCCCCGGCCCCCCGACCCAGCTCCCC
GGCCTCTGAGGCTGTGACAATGGACTATGACTTTAAAGTGAAGCTGAGCAGCGAGCGGGAGCGG
GTCGAGGACCTGTTTGAATACGAGGGCTGCAAAGTTGGCCGAGGCACTTATGGTCACGTCTACA
AAGCCAAGAGGAAAGATGGGAAGGATGATAAAGACTATGCTCTAAAACAAATAGAAGGAACTGG
GATCTCTATGTCGGCATGTAGAGAAATAGCATTACTTCGAGAGCTTAAACATCCAAATGTCATC
TCTCTTCAAAAGGTGTTTCTGTCTCATGCTGATCGGAAAGTTTGGCTTCTATTTGATTATGCTG
AACATGATCTCTGGCATATAATCAAGTTTCACAGAGCTTCTAAAGCAAACAAGAAGCCAGTTCA
GTTACCTCGGGGAATGGTGAAGTCACTATTATATCAGATCCTAGATGGAATTCACTACCTGCAT
GCTAACTGGGTGTTGCACAGGGATTTGAAACCTGCTAATATTTTAGTTATGGGTGAAGGTCCTG
AGCGAGGAAGAGTAAAAATTGCTGATATGGGCTTTGCCCGATTATTTAATTCACCTCTGAAGCC
TTTAGCAGATTTGGATCCAGTGGTTGTAACATTCTGGTACCGAGCCCCAGAACTACTTCTTGGA
GCAAGACATTATACCAAAGCTATTGATATTTGGGCTATAGGGTGTATATTTGCAGAACTACTAA
CGTCAGAACCAATATTTCACTGTCGGCAAGAGGACATCAAAACTAGTAATCCTTATCACCATGA
CCAGCTGGACAGAATATTCAATGTAATGGGATTTCCTGCAGATAAAGATTGGGAAGATATAAAA
AAGATGCCCGAACATTCAACATTAATGAAAGATTTCAGAAGAAATACGTACACCAACTGCAGTC
TTATCAAGTATATGGAAAAACACAAAGTAAAACCAGATAGTAAAGCATTCCACTTGCTTCAGAA
GTTGCTTACCATGGACCCAATAAAGCGAATTACCTCAGAACAGGCTATGCAGGATCCCTATTTC
TTAGAAGACCCACTTCCTACATCAGATGTTTTTGCCGGTTGTCAAATCCCTTACCCAAAACGAG
AATTTTTAACAGAAGAAGAACCTGATGACAAAGGAGACAAAAACCAGCAGCAGCAGCAGGGCAA
TAACCACACTAATGGAACTGGCCACCCAGGGAACCAAGACAGCAGTCACACACAGGGACCCCCG
TTGAAAAAAGTGAGAGTTGTTCCTCCTACCACTACCTCAGGTGGACTAATCATGACCTCAGACT
ATCAGCGTTCCAATCCACATGCTGCCTATCCCAACCCTGGACCAAGCACATCACAGCCCCAGAG
CAGCATGGGATACTCAGCTACCTCCCAGCAGCCTCCACAGTACTCACATCAGACACATCGGTAC
TGAGCTGCGTTGGAATCTTGTCAATGCACTGTTGCTAATGCTGCAGGACTGACTGTGCAGCTCT
CCGCGGGAACCTGGTATGGGCCATGAGAATGTACTGTACAACCACATCTTCAAAATGTCCAGTA
GCCAAGTTCCACCACTTTTCACAGATTGGGGTAGTGGCTTCCAAGTTGTACCTATTTTGGAGTT
AGACTTGAAAAGAAAGTGCTAGCACAGTTTGTGTTATGGATTTGCTACTTCCATAGTTTACTTG
ACATGGTTCAGACTGACCAATGCATTTTTTTCAGTGACAGTCTGTAGCAGTTGAAGCTGTGAAA
TGTGCTAGGGACAAGCATTTGTTGTTGTATGTGGTGACTTATTTCAGTGTAACAACATTATCTG
ACCAATAGTACACACAGACACAAAGTTTAACTGGTACTTGAAACATACAGTATGTTAACTCAAC
AAAATAACCAAGACTCAAAATGAGATTATTTTGGTACACCTTTCTTTTTAGTGTCTTATCAGTG
GGTTGATTGGTTTTCTACATTAATCAGTGTTTTTTGACCAAGAACATTGCTTGGTTTTTTGAAA
GTACAAAAAGCCACATAGTTTTTTTCCAGAAAGGTTACAAAACTCCCAAAGATTAATTTCCAAC
TTCTAAGTTTGTTTTCATTTTCAATCTATGACTTGACTGGTATTAAAGCTGCTATTTGATAGTA
GTAATTAAATATGTTGTCATTGATATAAACCTGTTTGGTTCAGCAAACAAACTAAAATGATTGT
CATAGACAGTGTTTTATTTTTCCTGTTGGTGTTGCTGATTTGTGAGCATGCTTTAAGATGAAAA
AAGCATGAATGATAACTTCCTTTAAAAGGTGCGGCATCCAATTCAGATATTTTGTCCTGATTTT
AAAGCTGGTTGGTGTAGTGCTATTAAAAAAATTTTGTTCAGTTAATTTTTCTTTTTTAACTTGT
TCGCACGTTGTTTAGGGTGCCCTTACTTCAGCAAAGGAGAAGGAGTAGGAGAGCCTTAGAATTT
TTGAGGGAAAAAAAAAACCTATAACATACAATGTACTGTATCAAACTATTTTACATGAATGACA
CAAGTATTCTGAATAAAAAAAATTGAACATTGTTAAAAACAAGGTGTTATGTAATAAATTTATT
TTTCATAAATCAAAA

hide sequence

RefSeq Acc Id:

XM_013366050 ⟹ XP_013221504

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	114,926,832 - 115,028,565 (+)	NCBI
SpeTri2.0	NW_004936948	92,180 - 192,956 (+)	NCBI

Sequence:

show sequence

CTGCAAAGTTGGCCGAGGCACTTATGGTCACGTCTACAAAGCCAAGAGGAAAGATGGCTGCTGC
TAGAGAATGAATATCCTACTGTCCTTTGCTCCTTCAGAACAATTTGTAAATCCTTTACTTCACA
CCAGCTTAGGAAGGATGATAAAGACTATGCTCTAAAACAAATAGAAGGAACTGGGATCTCTATG
TCGGCATGTAGAGAAATAGCATTACTTCGAGAGCTTAAACATCCAAATGTCATCTCTCTTCAAA
AGGTGTTTCTGTCTCATGCTGATCGGAAAGTTTGGCTTCTATTTGATTATGCTGAACATGATCT
CTGGCATATAATCAAGTTTCACAGAGCTTCTAAAGCAAACAAGAAGCCAGTTCAGTTACCTCGG
GGAATGGTGAAGTCACTATTATATCAGATCCTAGATGGAATTCACTACCTGCATGCTAACTGGG
TGTTGCACAGGGATTTGAAACCTGCTAATATTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAG
AGTAAAAATTGCTGATATGGGCTTTGCCCGATTATTTAATTCACCTCTGAAGCCTTTAGCAGAT
TTGGATCCAGTGGTTGTAACATTCTGGTACCGAGCCCCAGAACTACTTCTTGGAGCAAGACATT
ATACCAAAGCTATTGATATTTGGGCTATAGGGTGTATATTTGCAGAACTACTAACGTCAGAACC
AATATTTCACTGTCGGCAAGAGGACATCAAAACTAGTAATCCTTATCACCATGACCAGCTGGAC
AGAATATTCAATGTAATGGGATTTCCTGCAGATAAAGATTGGGAAGATATAAAAAAGATGCCCG
AACATTCAACATTAATGAAAGATTTCAGAAGAAATACGTACACCAACTGCAGTCTTATCAAGTA
TATGGAAAAACACAAAGTAAAACCAGATAGTAAAGCATTCCACTTGCTTCAGAAGTTGCTTACC
ATGGACCCAATAAAGCGAATTACCTCAGAACAGGCTATGCAGGATCCCTATTTCTTAGAAGACC
CACTTCCTACATCAGATGTTTTTGCCGGTTGTCAAATCCCTTACCCAAAACGAGAATTTTTAAC
AGAAGAAGAACCTGATGACAAAGGAGACAAAAAGAACCAGCAGCAGCAGCAGGGCAATAACCAC
ACTAATGGAACTGGCCACCCAGGGAACCAAGACAGCAGTCACACACAGGGACCCCCGTTGAAAA
AAGTGAGAGTTGTTCCTCCTACCACTACCTCAGGTGGACTAATCATGACCTCAGACTATCAGCG
TTCCAATCCACATGCTGCCTATCCCAACCCTGGACCAAGCACATCACAGCCCCAGAGCAGCATG
GGATACTCAGCTACCTCCCAGCAGCCTCCACAGTACTCACATCAGACACATCGGTACTGAGCTG
CGTTGGAATCTTGTCAATGCACTGTTGCTAATGCTGCAGGACTGACTGTGCAGCTCTCCGCGGG
AACCTGGTATGGGCCATGAGAATGTACTGTACAACCACATCTTCAAAATGTCCAGTAGCCAAGT
TCCACCACTTTTCACAGATTGGGGTAGTGGCTTCCAAGTTGTACCTATTTTGGAGTTAGACTTG
AAAAGAAAGTGCTAGCACAGTTTGTGTTATGGATTTGCTACTTCCATAGTTTACTTGACATGGT
TCAGACTGACCAATGCATTTTTTTCAGTGACAGTCTGTAGCAGTTGAAGCTGTGAAATGTGCTA
GGGACAAGCATTTGTTGTTGTATGTGGTGACTTATTTCAGTGTAACAACATTATCTGACCAATA
GTACACACAGACACAAAGTTTAACTGGTACTTGAAACATACAGTATGTTAACTCAA

hide sequence

RefSeq Acc Id:

XM_013366052 ⟹ XP_013221506

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	114,949,574 - 115,028,565 (+)	NCBI
SpeTri2.0	NW_004936948	114,840 - 192,956 (+)	NCBI

Sequence:

show sequence

AGCCTCAGCCTCCAAAGTCACTGGGATTACAGTAGTGTACCACTGTGCCCTATACTGGAAGGAT
GATAAAGACTATGCTCTAAAACAAATAGAAGGAACTGGGATCTCTATGTCGGCATGTAGAGAAA
TAGCATTACTTCGAGAGCTTAAACATCCAAATGTCATCTCTCTTCAAAAGGTGTTTCTGTCTCA
TGCTGATCGGAAAGTTTGGCTTCTATTTGATTATGCTGAACATGATCTCTGGCATATAATCAAG
TTTCACAGAGCTTCTAAAGCAAACAAGAAGCCAGTTCAGTTACCTCGGGGAATGGTGAAGTCAC
TATTATATCAGATCCTAGATGGAATTCACTACCTGCATGCTAACTGGGTGTTGCACAGGGATTT
GAAACCTGCTAATATTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAAATTGCTGAT
ATGGGCTTTGCCCGATTATTTAATTCACCTCTGAAGCCTTTAGCAGATTTGGATCCAGTGGTTG
TAACATTCTGGTACCGAGCCCCAGAACTACTTCTTGGAGCAAGACATTATACCAAAGCTATTGA
TATTTGGGCTATAGGGTGTATATTTGCAGAACTACTAACGTCAGAACCAATATTTCACTGTCGG
CAAGAGGACATCAAAACTAGTAATCCTTATCACCATGACCAGCTGGACAGAATATTCAATGTAA
TGGGATTTCCTGCAGATAAAGATTGGGAAGATATAAAAAAGATGCCCGAACATTCAACATTAAT
GAAAGATTTCAGAAGAAATACGTACACCAACTGCAGTCTTATCAAGTATATGGAAAAACACAAA
GTAAAACCAGATAGTAAAGCATTCCACTTGCTTCAGAAGTTGCTTACCATGGACCCAATAAAGC
GAATTACCTCAGAACAGGCTATGCAGGATCCCTATTTCTTAGAAGACCCACTTCCTACATCAGA
TGTTTTTGCCGGTTGTCAAATCCCTTACCCAAAACGAGAATTTTTAACAGAAGAAGAACCTGAT
GACAAAGGAGACAAAAAGAACCAGCAGCAGCAGCAGGGCAATAACCACACTAATGGAACTGGCC
ACCCAGGGAACCAAGACAGCAGTCACACACAGGGACCCCCGTTGAAAAAAGTGAGAGTTGTTCC
TCCTACCACTACCTCAGGTGGACTAATCATGACCTCAGACTATCAGCGTTCCAATCCACATGCT
GCCTATCCCAACCCTGGACCAAGCACATCACAGCCCCAGAGCAGCATGGGATACTCAGCTACCT
CCCAGCAGCCTCCACAGTACTCACATCAGACACATCGGTACTGAGCTGCGTTGGAATCTTGTCA
ATGCACTGTTGCTAATGCTGCAGGACTGACTGTGCAGCTCTCCGCGGGAACCTGGTATGGGCCA
TGAGAATGTACTGTACAACCACATCTTCAAAATGTCCAGTAGCCAAGTTCCACCACTTTTCACA
GATTGGGGTAGTGGCTTCCAAGTTGTACCTATTTTGGAGTTAGACTTGAAAAGAAAGTGCTAGC
ACAGTTTGTGTTATGGATTTGCTACTTCCATAGTTTACTTGACATGGTTCAGACTGACCAATGC
ATTTTTTTCAGTGACAGTCTGTAGCAGTTGAAGCTGTGAAATGTGCTAGGGACAAGCATTTGTT
GTTGTATGTGGTGACTTATTTCAGTGTAACAACATTATCTGACCAATAGTACACACAGACACAA
AGTTTAACTGGTACTTGAAACATACAGTATGTTAACTCAA

hide sequence

RefSeq Acc Id:

XM_021721268 ⟹ XP_021576943

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	114,926,731 - 115,028,565 (+)	NCBI
SpeTri2.0	NW_004936948	91,593 - 192,956 (+)	NCBI

Sequence:

show sequence

TGTGAGGAGGTACCGGCTGTTGTGCGGTGCTGCCTTTCTGTTTGAGTGTATGGGAGAGTGAGTG
AGTGAGTGAGTGTGAGCGCGCGTGTGTGTGAGAGGGTGAAGAGTGAGTGCGTGTGTGAGAGGAA
GAGAGCCCTCCGTGGCCGCTCCGCCGCTCCACCGCAGTGGGAGCAGGACGCGCGGCCGGAAAGA
GCAGGGGTGCCGGCGCCCGGGGAGCCCGAGGGGACAAGGGCAGAGACACTCGCTCCCCACCCCC
AGCTCTCGTCCCTTGGCTCTCCTTCGCGCAGGGGGAGCCTTTCCGTCCTCCCCTGGCCGGCCTC
TGCCCCGCTGCTCCCCTGGATGTCCCTGGCGCTCTCTCGGGGCCTCCTGCTCTTGCTGCATCAG
TCGGGCTGGTGCTGCGGCCGGCGGGTGTAGAGCGGGCGGGTTCCCGGGGGCTGCGGCTGCCCGA
GCTTCCCCGGTCCCCACCCCGACCCCCCGGCCCCCCGACCCAGCTCCCCGGCCTCTGAGGCTGT
GACAATGGACTATGACTTTAAAGTGAAGCTGAGCAGCGAGCGGGAGCGGGTCGAGGACCTGTTT
GAATACGAGGGCTGCAAAGTTGGCCGAGGCACTTATGGTCACGTCTACAAAGCCAAGAGGAAAG
ATGGGAAGGATGATAAAGACTATGCTCTAAAACAAATAGAAGGAACTGGGATCTCTATGTCGGC
ATGTAGAGAAATAGCATTACTTCGAGAGCTTAAACATCCAAATGTCATCTCTCTTCAAAAGGTG
TTTCTGTCTCATGCTGATCGGAAAGTTTGGCTTCTATTTGATTATGCTGAACATGATCTCTGGC
ATATAATCAAGTTTCACAGAGCTTCTAAAGCAAACAAGAAGCCAGTTCAGTTACCTCGGGGAAT
GGTGAAGTCACTATTATATCAGATCCTAGATGGAATTCACTACCTGCATGCTAACTGGGTGTTG
CACAGGGATTTGAAACCTGCTAATATTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAA
AAATTGCTGATATGGGCTTTGCCCGATTATTTAATTCACCTCTGAAGCCTTTAGCAGATTTGGA
TCCAGTGGTTGTAACATTCTGGTACCGAGCCCCAGAACTACTTCTTGGAGCAAGACATTATACC
AAAGCTATTGATAAAGATTGGGAAGATATAAAAAAGATGCCCGAACATTCAACATTAATGAAAG
ATTTCAGAAGAAATACGTACACCAACTGCAGTCTTATCAAGTATATGGAAAAACACAAAGTAAA
ACCAGATAGTAAAGCATTCCACTTGCTTCAGAAGTTGCTTACCATGGACCCAATAAAGCGAATT
ACCTCAGAACAGGCTATGCAGGATCCCTATTTCTTAGAAGACCCACTTCCTACATCAGATGTTT
TTGCCGGTTGTCAAATCCCTTACCCAAAACGAGAATTTTTAACAGAAGAAGAACCTGATGACAA
AGGAGACAAAAAGAACCAGCAGCAGCAGCAGGGCAATAACCACACTAATGGAACTGGCCACCCA
GGGAACCAAGACAGCAGTCACACACAGGGACCCCCGTTGAAAAAAGTGAGAGTTGTTCCTCCTA
CCACTACCTCAGGTGGACTAATCATGACCTCAGACTATCAGCGTTCCAATCCACATGCTGCCTA
TCCCAACCCTGGACCAAGCACATCACAGCCCCAGAGCAGCATGGGATACTCAGCTACCTCCCAG
CAGCCTCCACAGTACTCACATCAGACACATCGGTACTGAGCTGCGTTGGAATCTTGTCAATGCA
CTGTTGCTAATGCTGCAGGACTGACTGTGCAGCTCTCCGCGGGAACCTGGTATGGGCCATGAGA
ATGTACTGTACAACCACATCTTCAAAATGTCCAGTAGCCAAGTTCCACCACTTTTCACAGATTG
GGGTAGTGGCTTCCAAGTTGTACCTATTTTGGAGTTAGACTTGAAAAGAAAGTGCTAGCACAGT
TTGTGTTATGGATTTGCTACTTCCATAGTTTACTTGACATGGTTCAGACTGACCAATGCATTTT
TTTCAGTGACAGTCTGTAGCAGTTGAAGCTGTGAAATGTGCTAGGGACAAGCATTTGTTGTTGT
ATGTGGTGACTTATTTCAGTGTAACAACATTATCTGACCAATAGTACACACAGACACAAAGTTT
AACTGGTACTTGAAACATACAGTATGTTAACTCAA

hide sequence

RefSeq Acc Id:

XM_021721269 ⟹ XP_021576944

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	114,926,841 - 115,028,565 (+)	NCBI
SpeTri2.0	NW_004936948	92,149 - 192,956 (+)	NCBI

Sequence:

show sequence

AGCGGGTCGAGGACCTGTTTGAATACGAGGGCTGCAAAGTTGGCCGAGGCACTTATGGTCACGT
CTACAAAGCCAAGAGGAAAGATGGGAAGAGTCAGGAGCTGGAATTTTCTACATTGCTGAAGTGG
TAGTGGAAACAGATTGAAAGGGCTGCTGCTAGAGAATGAATATCCTACTGTCCTTTGCTCCTTC
AGAACAATTTGTAAATCCTTTACTTCACACCAGCTTAGGAAGGATGATAAAGACTATGCTCTAA
AACAAATAGAAGGAACTGGGATCTCTATGTCGGCATGTAGAGAAATAGCATTACTTCGAGAGCT
TAAACATCCAAATGTCATCTCTCTTCAAAAGGTGTTTCTGTCTCATGCTGATCGGAAAGTTTGG
CTTCTATTTGATTATGCTGAACATGATCTCTGGCATATAATCAAGTTTCACAGAGCTTCTAAAG
CAAACAAGAAGCCAGTTCAGTTACCTCGGGGAATGGTGAAGTCACTATTATATCAGATCCTAGA
TGGAATTCACTACCTGCATGCTAACTGGGTGTTGCACAGGGATTTGAAACCTGCTAATATTTTA
GTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAAATTGCTGATATGGGCTTTGCCCGATTAT
TTAATTCACCTCTGAAGCCTTTAGCAGATTTGGATCCAGTGGTTGTAACATTCTGGTACCGAGC
CCCAGAACTACTTCTTGGAGCAAGACATTATACCAAAGCTATTGATATTTGGGCTATAGGGTGT
ATATTTGCAGAACTACTAACGTCAGAACCAATATTTCACTGTCGGCAAGAGGACATCAAAACTA
GTAATCCTTATCACCATGACCAGCTGGACAGAATATTCAATGTAATGGGATTTCCTGCAGATAA
AGATTGGGAAGATATAAAAAAGATGCCCGAACATTCAACATTAATGAAAGATTTCAGAAGAAAT
ACGTACACCAACTGCAGTCTTATCAAGTATATGGAAAAACACAAAGTAAAACCAGATAGTAAAG
CATTCCACTTGCTTCAGAAGTTGCTTACCATGGACCCAATAAAGCGAATTACCTCAGAACAGGC
TATGCAGGATCCCTATTTCTTAGAAGACCCACTTCCTACATCAGATGTTTTTGCCGGTTGTCAA
ATCCCTTACCCAAAACGAGAATTTTTAACAGAAGAAGAACCTGATGACAAAGGAGACAAAAAGA
ACCAGCAGCAGCAGCAGGGCAATAACCACACTAATGGAACTGGCCACCCAGGGAACCAAGACAG
CAGTCACACACAGGGACCCCCGTTGAAAAAAGTGAGAGTTGTTCCTCCTACCACTACCTCAGGT
GGACTAATCATGACCTCAGACTATCAGCGTTCCAATCCACATGCTGCCTATCCCAACCCTGGAC
CAAGCACATCACAGCCCCAGAGCAGCATGGGATACTCAGCTACCTCCCAGCAGCCTCCACAGTA
CTCACATCAGACACATCGGTACTGAGCTGCGTTGGAATCTTGTCAATGCACTGTTGCTAATGCT
GCAGGACTGACTGTGCAGCTCTCCGCGGGAACCTGGTATGGGCCATGAGAATGTACTGTACAAC
CACATCTTCAAAATGTCCAGTAGCCAAGTTCCACCACTTTTCACAGATTGGGGTAGTGGCTTCC
AAGTTGTACCTATTTTGGAGTTAGACTTGAAAAGAAAGTGCTAGCACAGTTTGTGTTATGGATT
TGCTACTTCCATAGTTTACTTGACATGGTTCAGACTGACCAATGCATTTTTTTCAGTGACAGTC
TGTAGCAGTTGAAGCTGTGAAATGTGCTAGGGACAAGCATTTGTTGTTGTATGTGGTGACTTAT
TTCAGTGTAACAACATTATCTGACCAATAGTACACACAGACACAAAGTTTAACTGGTACTTGAA
ACATACAGTATGTTAACTCAA

hide sequence

RefSeq Acc Id:

XM_021721270 ⟹ XP_021576945

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	114,926,309 - 115,028,565 (+)	NCBI
SpeTri2.0	NW_004936948	91,578 - 193,676 (+)	NCBI

Sequence:

show sequence

CCCGCCCTCCTCCTCTGTGAGGAGGTACCGGCTGTTGTGCGGTGCTGCCTTTCTGTTTGAGTGT
ATGGGAGAGTGAGTGAGTGAGTGAGTGTGAGCGCGCGTGTGTGTGAGAGGGTGAAGAGTGAGTG
CGTGTGTGAGAGGAAGAGAGCCCTCCGTGGCCGCTCCGCCGCTCCACCGCAGTGGGAGCAGGAC
GCGCGGCCGGAAAGAGCAGGGGTGCCGGCGCCCGGGGAGCCCGAGGGGACAAGGGCAGAGACAC
TCGCTCCCCACCCCCAGCTCTCGTCCCTTGGCTCTCCTTCGCGCAGGGGGAGCCTTTCCGTCCT
CCCCTGGCCGGCCTCTGCCCCGCTGCTCCCCTGGATGTCCCTGGCGCTCTCTCGGGGCCTCCTG
CTCTTGCTGCATCAGTCGGGCTGGTGCTGCGGCCGGCGGGTGTAGAGCGGGCGGGTTCCCGGGG
GCTGCGGCTGCCCGAGCTTCCCCGGTCCCCACCCCGACCCCCCGGCCCCCCGACCCAGCTCCCC
GGCCTCTGAGGCTGTGACAATGGACTATGACTTTAAAGTGAAGCTGAGCAGCGAGCGGGAGCGG
GTCGAGGACCTGTTTGAATACGAGGGCTGCAAAGTTGGCCGAGGCACTTATGGTCACGTCTACA
AAGCCAAGAGGAAAGATGGGAAGGATGATAAAGACTATGCTCTAAAACAAATAGAAGGAACTGG
GATCTCTATGTCGGCATGTAGAGAAATAGCATTACTTCGAGAGCTTAAACATCCAAATGTCATC
TCTCTTCAAAAGGTGTTTCTGTCTCATGCTGATCGGAAAGTTTGGCTTCTATTTGATTATGCTG
AACATGATCTCTGGCATATAATCAAGTTTCACAGAGCTTCTAAAGCAAACAAGAAGCCAGTTCA
GTTACCTCGGGGAATGGTGAAGTCACTATTATATCAGATCCTAGATGGAATTCACTACCTGCAT
GCTAACTGGGTGTTGCACAGGGATTTGCTGATATGGGCTTTGCCCGATTATTTAATTCACCTCT
GAAGCCTTTAGCAGATTTGGATCCAGTGGTTGTAACATTCTGGTACCGAGCCCCAGAACTACTT
CTTGGAGCAAGACATTATACCAAAGCTATTGATATTTGGGCTATAGGGTGTATATTTGCAGAAC
TACTAACGTCAGAACCAATATTTCACTGTCGGCAAGAGGACATCAAAACTAGTAATCCTTATCA
CCATGACCAGCTGGACAGAATATTCAATGTAATGGGATTTCCTGCAGATAAAGATTGGGAAGAT
ATAAAAAAGATGCCCGAACATTCAACATTAATGAAAGATTTCAGAAGAAATACGTACACCAACT
GCAGTCTTATCAAGTATATGGAAAAACACAAAGTAAAACCAGATAGTAAAGCATTCCACTTGCT
TCAGAAGTTGCTTACCATGGACCCAATAAAGCGAATTACCTCAGAACAGGCTATGCAGGATCCC
TATTTCTTAGAAGACCCACTTCCTACATCAGATGTTTTTGCCGGTTGTCAAATCCCTTACCCAA
AACGAGAATTTTTAACAGAAGAAGAACCTGATGACAAAGGAGACAAAAAGAACCAGCAGCAGCA
GCAGGGCAATAACCACACTAATGGAACTGGCCACCCAGGGAACCAAGACAGCAGTCACACACAG
GGACCCCCGTTGAAAAAAGTGAGAGTTGTTCCTCCTACCACTACCTCAGGTGGACTAATCATGA
CCTCAGACTATCAGCGTTCCAATCCACATGCTGCCTATCCCAACCCTGGACCAAGCACATCACA
GCCCCAGAGCAGCATGGGATACTCAGCTACCTCCCAGCAGCCTCCACAGTACTCACATCAGACA
CATCGGTACTGAGCTGCGTTGGAATCTTGTCAATGCACTGTTGCTAATGCTGCAGGACTGACTG
TGCAGCTCTCCGCGGGAACCTGGTATGGGCCATGAGAATGTACTGTACAACCACATCTTCAAAA
TGTCCAGTAGCCAAGTTCCACCACTTTTCACAGATTGGGGTAGTGGCTTCCAAGTTGTACCTAT
TTTGGAGTTAGACTTGAAAAGAAAGTGCTAGCACAGTTTGTGTTATGGATTTGCTACTTCCATA
GTTTACTTGACATGGTTCAGACTGACCAATGCATTTTTTTCAGTGACAGTCTGTAGCAGTTGAA
GCTGTGAAATGTGCTAGGGACAAGCATTTGTTGTTGTATGTGGTGACTTATTTCAGTGTAACAA
CATTATCTGACCAATAGTACACACAGACACAAAGTTTAACTGGTACTTGAAACATACAGTATGT
TAACTCAACAAAATAACCAAGACTCAAAATGAGATTATTTTGGTACACCTTTCTTTTTAGTGTC
TTATCAGTGGGTTGATTGGTTTTCTACATTAATCAGTGTTTTTTGACCAAGAACATTGCTTGGT
TTTTTGAAAGTACAAAAAGCCACATAGTTTTTTTCCAGAAAGGTTACAAAACTCCCAAAGATTA
ATTTCCAACTTCTAAGTTTGTTTTCATTTTCAATCTATGACTTGACTGGTATTAAAGCTGCTAT
TTGATAGTAGTAATTAAATATGTTGTCATTGATATAAACCTGTTTGGTTCAGCAAACAAACTAA
AATGATTGTCATAGACAGTGTTTTATTTTTCCTGTTGGTGTTGCTGATTTGTGAGCATGCTTTA
AGATGAAAAAAGCATGAATGATAACTTCCTTTAAAAGGTGCGGCATCCAATTCAGATATTTTGT
CCTGATTTTAAAGCTGGTTGGTGTAGTGCTATTAAAAAAATTTTGTTCAGTTAATTTTTCTTTT
TTAACTTGTTCGCACGTTGTTTAGGGTGCCCTTACTTCAGCAAAGGAGAAGGAGTAGGAGAGCC
TTAGAATTTTTGAGGGAAAAAAAAAACCTATAACATACAATGTACTGTATCAAACTATTTTACA
TGAATGACACAAGTATTCTGAATAAAAAAAATTGAACATTGTTAAAAACAAGGTGTTATGTAAT
AAATTTATTTTTCATAAATCAAAA

hide sequence

RefSeq Acc Id:

XM_040281267 ⟹ XP_040137201

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	114,990,883 - 115,028,565 (+)	NCBI

RefSeq Acc Id:

XM_040281268 ⟹ XP_040137202

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	114,990,878 - 115,028,565 (+)	NCBI

RefSeq Acc Id:

XM_040281269 ⟹ XP_040137203

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	114,989,113 - 115,028,565 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005342097	(Get FASTA)	NCBI Sequence Viewer
	XP_005342098	(Get FASTA)	NCBI Sequence Viewer
	XP_013221504	(Get FASTA)	NCBI Sequence Viewer
	XP_013221506	(Get FASTA)	NCBI Sequence Viewer
	XP_021576943	(Get FASTA)	NCBI Sequence Viewer
	XP_021576944	(Get FASTA)	NCBI Sequence Viewer
	XP_021576945	(Get FASTA)	NCBI Sequence Viewer
	XP_040137201	(Get FASTA)	NCBI Sequence Viewer
	XP_040137202	(Get FASTA)	NCBI Sequence Viewer
	XP_040137203	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000014830.3
GenBank Protein	KAG3292757	(Get FASTA)	NCBI Sequence Viewer
	KAG3292758	(Get FASTA)	NCBI Sequence Viewer
	KAG3292759	(Get FASTA)	NCBI Sequence Viewer
	KAG3292760	(Get FASTA)	NCBI Sequence Viewer
	KAG3292761	(Get FASTA)	NCBI Sequence Viewer
	KAG3292762	(Get FASTA)	NCBI Sequence Viewer
	KAG3292763	(Get FASTA)	NCBI Sequence Viewer
	KAG3292764	(Get FASTA)	NCBI Sequence Viewer
	KAG3292765	(Get FASTA)	NCBI Sequence Viewer
	KAG3292766	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005342097 ⟸ XM_005342040
- Peptide Label:	isoform X1
- UniProtKB:	I3MRT5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDYDFKVKLSSERERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSAC REIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMV KSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDP VVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIF NVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDP IKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLTEEEPDDKGDKKNQQQQQGNNHTNG TGHPGNQDSSHTQGPPLKKVRVVPPTTTSGGLIMTSDYQRSNPHAAYPNPGPSTSQPQSSMGYS ATSQQPPQYSHQTHRY hide sequence

RefSeq Acc Id:

XP_005342098 ⟸ XM_005342041

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDYDFKVKLSSERERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSAC
REIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMV
KSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDP
VVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIF
NVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDP
IKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLTEEEPDDKGDKNQQQQQGNNHTNGT
GHPGNQDSSHTQGPPLKKVRVVPPTTTSGGLIMTSDYQRSNPHAAYPNPGPSTSQPQSSMGYSA
TSQQPPQYSHQTHRY

hide sequence

RefSeq Acc Id:

XP_013221504 ⟸ XM_013366050

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLP
RGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLA
DLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQL
DRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLL
TMDPIKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLTEEEPDDKGDKKNQQQQQGNN
HTNGTGHPGNQDSSHTQGPPLKKVRVVPPTTTSGGLIMTSDYQRSNPHAAYPNPGPSTSQPQSS
MGYSATSQQPPQYSHQTHRY

hide sequence

RefSeq Acc Id:

XP_013221506 ⟸ XM_013366052

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLP
RGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLA
DLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQL
DRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLL
TMDPIKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLTEEEPDDKGDKKNQQQQQGNN
HTNGTGHPGNQDSSHTQGPPLKKVRVVPPTTTSGGLIMTSDYQRSNPHAAYPNPGPSTSQPQSS
MGYSATSQQPPQYSHQTHRY

hide sequence

RefSeq Acc Id:

XP_021576945 ⟸ XM_021721270

- Peptide Label:

isoform X6

- Sequence:

show sequence

MGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR
QEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHK
VKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLTEEEPD
DKGDKKNQQQQQGNNHTNGTGHPGNQDSSHTQGPPLKKVRVVPPTTTSGGLIMTSDYQRSNPHA
AYPNPGPSTSQPQSSMGYSATSQQPPQYSHQTHRY

hide sequence

RefSeq Acc Id:

XP_021576943 ⟸ XM_021721268

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDYDFKVKLSSERERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSAC
REIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMV
KSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDP
VVVTFWYRAPELLLGARHYTKAIDKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKP
DSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLTEEEPDDKG
DKKNQQQQQGNNHTNGTGHPGNQDSSHTQGPPLKKVRVVPPTTTSGGLIMTSDYQRSNPHAAYP
NPGPSTSQPQSSMGYSATSQQPPQYSHQTHRY

hide sequence

RefSeq Acc Id:

XP_021576944 ⟸ XM_021721269

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLP
RGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLA
DLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQL
DRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLL
TMDPIKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLTEEEPDDKGDKKNQQQQQGNN
HTNGTGHPGNQDSSHTQGPPLKKVRVVPPTTTSGGLIMTSDYQRSNPHAAYPNPGPSTSQPQSS
MGYSATSQQPPQYSHQTHRY

hide sequence

RefSeq Acc Id:	XP_040137203 ⟸ XM_040281269
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_040137202 ⟸ XM_040281268
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_040137201 ⟸ XM_040281267
- Peptide Label:	isoform X5

Protein Domains

Protein kinase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000016568	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000016571.3	UniProtKB/TrEMBL
Gene3D-CATH	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
InterPro	Kinase-like_dom_sf	UniProtKB/TrEMBL
	Prot_kinase_dom	UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/TrEMBL
NCBI Gene	Cdk8	ENTREZGENE
PANTHER	CELL DIVISION PROTEIN KINASE	UniProtKB/TrEMBL
	CYCLIN-DEPENDENT KINASE 8	UniProtKB/TrEMBL
Pfam	Pkinase	UniProtKB/TrEMBL
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/TrEMBL
SMART	S_TKc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56112	UniProtKB/TrEMBL
UniProt	I3MRT5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations