Nrp2 (neuropilin 2) - Rat Genome Database

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Gene: Nrp2 (neuropilin 2) Ictidomys tridecemlineatus
Analyze
Symbol: Nrp2
Name: neuropilin 2
RGD ID: 12644993
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN axon guidance (ortholog); cellular response to leukemia inhibitory factor (ortholog); heart development (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Hirschsprung's disease (ortholog); FOUND IN glutamatergic synapse (ortholog); integral component of postsynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuropilin 2, transcript variant X1; neuropilin 2, transcript variant X2; neuropilin 2, transcript variant X3; neuropilin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303162,471,295 - 162,587,007 (+)NCBI
SpeTri2.0NW_0049366312,106,378 - 2,222,082 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Nrp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303162,471,295 - 162,587,007 (+)NCBI
SpeTri2.0NW_0049366312,106,378 - 2,222,082 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382205,682,501 - 205,798,131 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2205,681,990 - 205,798,133 (+)EnsemblGRCh38hg38GRCh38
GRCh372206,547,225 - 206,662,855 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362206,255,469 - 206,371,102 (+)NCBINCBI36hg18NCBI36
Build 342206,372,729 - 206,488,362NCBI
Celera2200,305,001 - 200,420,624 (+)NCBI
Cytogenetic Map2q33.3NCBI
HuRef2198,395,758 - 198,511,368 (+)NCBIHuRef
CHM1_12206,553,933 - 206,669,559 (+)NCBICHM1_1
T2T-CHM13v2.02206,164,852 - 206,280,478 (+)NCBI
Nrp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39162,742,476 - 62,857,851 (+)NCBIGRCm39mm39
GRCm39 Ensembl162,742,444 - 62,857,854 (+)Ensembl
GRCm38162,703,317 - 62,818,692 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl162,703,285 - 62,818,695 (+)EnsemblGRCm38mm10GRCm38
MGSCv37162,749,891 - 62,865,266 (+)NCBIGRCm37mm9NCBIm37
MGSCv36162,637,986 - 62,750,163 (+)NCBImm8
Celera163,214,234 - 63,328,949 (+)NCBICelera
Cytogenetic Map1C2NCBI
Nrp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2964,122,815 - 64,238,007 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl964,123,132 - 64,237,958 (+)Ensembl
Rnor_6.0969,496,875 - 69,609,802 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl969,497,121 - 69,612,087 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0969,307,221 - 69,420,379 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4961,348,529 - 61,460,457 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1961,495,510 - 61,607,439 (+)NCBI
Celera961,541,966 - 61,654,219 (+)NCBICelera
Cytogenetic Map9q32NCBI
Nrp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554579,197,405 - 9,316,787 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554579,197,621 - 9,316,789 (-)NCBIChiLan1.0ChiLan1.0
NRP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B211,042,324 - 211,157,547 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B211,042,324 - 211,157,547 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B92,911,721 - 93,027,032 (+)NCBIMhudiblu_PPA_v0panPan3
NRP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13714,293,545 - 14,408,984 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3714,293,614 - 14,406,949 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3715,172,096 - 15,287,617 (+)NCBI
ROS_Cfam_1.03714,230,443 - 14,345,834 (+)NCBI
ROS_Cfam_1.0 Ensembl3714,230,535 - 14,345,832 (+)Ensembl
UMICH_Zoey_3.13714,184,082 - 14,299,459 (+)NCBI
UNSW_CanFamBas_1.03714,156,464 - 14,271,604 (+)NCBI
UU_Cfam_GSD_1.03714,150,952 - 14,266,106 (+)NCBI
NRP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15108,974,816 - 109,092,305 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115108,974,246 - 109,092,316 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap15q21-q26NCBI
NRP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11091,460,179 - 91,575,408 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1091,460,373 - 91,557,430 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040107,804,373 - 107,919,654 (-)NCBIVero_WHO_p1.0
Nrp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476510,372,099 - 10,484,963 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462476510,372,172 - 10,484,766 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005335095   ⟹   XP_005335152
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303162,471,296 - 162,587,007 (+)NCBI
SpeTri2.0NW_0049366312,106,379 - 2,222,082 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005335099   ⟹   XP_005335156
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303162,471,296 - 162,568,264 (+)NCBI
SpeTri2.0NW_0049366312,106,378 - 2,200,163 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040294779   ⟹   XP_040150713
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303162,471,295 - 162,587,007 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005335152   ⟸   XM_005335095
- Peptide Label: isoform X2
- UniProtKB: A0A287D446 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005335156   ⟸   XM_005335099
- Peptide Label: isoform X3
- UniProtKB: A0A287CU05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040150713   ⟸   XM_040294779
- Peptide Label: isoform X1
Protein Domains
CUB   F5/8 type C   MAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010229 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000009181.3 UniProtKB/TrEMBL
  ENSSTOP00000024767 ENTREZGENE
  ENSSTOP00000024767.1 UniProtKB/TrEMBL
  ENSSTOP00000028328 ENTREZGENE
  ENSSTOP00000028328.1 UniProtKB/TrEMBL
  ENSSTOP00000029415.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010233.3 UniProtKB/TrEMBL
  ENSSTOT00000034115.1 UniProtKB/TrEMBL
  ENSSTOT00000040368.1 UniProtKB/TrEMBL
  ENSSTOT00000040823.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.290 UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  CUB_dom UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  MAM_dom UniProtKB/TrEMBL
  Neuropilin UniProtKB/TrEMBL
  Neuropilin-2 UniProtKB/TrEMBL
  Neuropilin_C UniProtKB/TrEMBL
  Sperma_CUB_dom_sf UniProtKB/TrEMBL
NCBI Gene Nrp2 ENTREZGENE
PANTHER PTHR46806:SF2 UniProtKB/TrEMBL
Pfam CUB UniProtKB/TrEMBL
  DUF3481 UniProtKB/TrEMBL
  F5_F8_type_C UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
PIRSF Neuropilin UniProtKB/TrEMBL
PRINTS MAMDOMAIN UniProtKB/TrEMBL
PROSITE CUB UniProtKB/TrEMBL
  FA58C_1 UniProtKB/TrEMBL
  FA58C_2 UniProtKB/TrEMBL
  FA58C_3 UniProtKB/TrEMBL
  MAM_2 UniProtKB/TrEMBL
SMART CUB UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
Superfamily-SCOP SSF49785 UniProtKB/TrEMBL
  SSF49854 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A287CU05 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D446 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D793_ICTTR UniProtKB/TrEMBL
  I3MF34_ICTTR UniProtKB/TrEMBL