Slc35f5 (solute carrier family 35 member F5) - Rat Genome Database

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Gene: Slc35f5 (solute carrier family 35 member F5) Ictidomys tridecemlineatus
Analyze
Symbol: Slc35f5
Name: solute carrier family 35 member F5
RGD ID: 12644966
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 35 member F5, transcript variant X1; solute carrier family 35 member F5, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530385,738,498 - 85,792,561 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646955,825,552 - 55,858,516 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646955,824,332 - 55,879,238 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc35f5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530385,738,498 - 85,792,561 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646955,825,552 - 55,858,516 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646955,824,332 - 55,879,238 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35F5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382113,702,682 - 113,756,642 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2113,705,011 - 113,756,693 (-)EnsemblGRCh38hg38GRCh38
GRCh372114,464,286 - 114,514,219 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362114,188,400 - 114,244,975 (-)NCBINCBI36Build 36hg18NCBI36
Build 342114,188,162 - 114,230,630NCBI
Celera2107,786,371 - 107,828,842 (-)NCBICelera
Cytogenetic Map2q14.1NCBI
HuRef2106,788,155 - 106,830,612 (-)NCBIHuRef
CHM1_12114,475,477 - 114,517,976 (-)NCBICHM1_1
T2T-CHM13v2.02114,127,410 - 114,181,350 (-)NCBIT2T-CHM13v2.0
Slc35f5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391125,488,275 - 125,523,571 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1125,488,332 - 125,523,557 (+)EnsemblGRCm39 Ensembl
GRCm381125,560,528 - 125,595,834 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1125,560,595 - 125,595,820 (+)EnsemblGRCm38mm10GRCm38
MGSCv371127,457,593 - 127,492,261 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361127,388,582 - 127,423,361 (+)NCBIMGSCv36mm8
Celera1128,217,517 - 128,253,989 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map154.7NCBI
Slc35f5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81339,544,253 - 39,581,210 (+)NCBIGRCr8
mRatBN7.21336,992,118 - 37,028,549 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1336,992,205 - 37,028,538 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1339,592,245 - 39,628,215 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01340,880,255 - 40,916,229 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01338,139,269 - 38,175,493 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01341,882,733 - 41,922,358 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1341,883,137 - 41,922,339 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01346,994,193 - 47,034,025 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41338,057,106 - 38,093,225 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11338,071,151 - 38,107,243 (+)NCBI
Celera1336,796,250 - 36,832,062 (+)NCBICelera
Cytogenetic Map13q12NCBI
Slc35f5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545915,407,076 - 15,440,536 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545915,407,686 - 15,440,536 (+)NCBIChiLan1.0ChiLan1.0
SLC35F5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21315,688,521 - 15,805,290 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B15,706,727 - 15,753,457 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B643,864 - 687,490 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B114,188,432 - 114,232,159 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B114,192,967 - 114,231,750 (-)Ensemblpanpan1.1panPan2
SLC35F5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11935,265,879 - 35,304,393 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1935,265,661 - 35,301,332 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1935,497,322 - 35,536,083 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01936,700,804 - 36,739,752 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11935,348,509 - 35,387,388 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01935,509,823 - 35,548,559 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01936,729,464 - 36,768,244 (+)NCBIUU_Cfam_GSD_1.0
SLC35F5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1519,936,402 - 19,971,692 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11519,924,437 - 19,971,767 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21522,547,528 - 22,594,753 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35F5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11016,514,145 - 16,557,773 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1016,514,313 - 16,552,177 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660615,988,244 - 6,031,837 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc35f5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473231,612,410 - 31,647,984 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473231,612,438 - 31,648,984 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000003283   ⟹   ENSSTOP00000002935
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493646955,825,552 - 55,858,516 (+)Ensembl
RefSeq Acc Id: XM_005315933   ⟹   XP_005315990
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530385,759,345 - 85,792,561 (-)NCBI
SpeTri2.0NW_00493646955,824,332 - 55,858,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722200   ⟹   XP_021577875
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530385,738,498 - 85,792,470 (-)NCBI
SpeTri2.0NW_00493646955,825,297 - 55,879,238 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040294093   ⟹   XP_040150027
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530385,749,655 - 85,792,470 (-)NCBI
RefSeq Acc Id: XM_040294094   ⟹   XP_040150028
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530385,759,345 - 85,791,876 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005315990 (Get FASTA)   NCBI Sequence Viewer  
  XP_021577875 (Get FASTA)   NCBI Sequence Viewer  
  XP_040150027 (Get FASTA)   NCBI Sequence Viewer  
  XP_040150028 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002935.3
GenBank Protein KAG3274222 (Get FASTA)   NCBI Sequence Viewer  
  KAG3274223 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005315990   ⟸   XM_005315933
- Peptide Label: isoform X1
- UniProtKB: I3M1Z9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021577875   ⟸   XM_021722200
- Peptide Label: isoform X1
- UniProtKB: I3M1Z9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040150027   ⟸   XM_040294093
- Peptide Label: isoform X1
- UniProtKB: I3M1Z9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040150028   ⟸   XM_040294094
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000002935   ⟸   ENSSTOT00000003283
Protein Domains
EamA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003270 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003283.3 UniProtKB/TrEMBL
InterPro EamA_dom UniProtKB/TrEMBL
NCBI Gene Slc35f5 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 35 MEMBER F5 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 35, MEMBER F5 UniProtKB/TrEMBL
Pfam EamA UniProtKB/TrEMBL
Superfamily-SCOP Multidrug resistance efflux transporter EmrE UniProtKB/TrEMBL
UniProt I3M1Z9 ENTREZGENE, UniProtKB/TrEMBL