LOC101956537 (keratin-associated protein 17-1) - Rat Genome Database

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Gene: LOC101956537 (keratin-associated protein 17-1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101956537
Name: keratin-associated protein 17-1
RGD ID: 12644919
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560220,795,041 - 20,795,906 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649016,279,697 - 16,280,020 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
LOC101956537
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560220,795,041 - 20,795,906 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649016,279,697 - 16,280,020 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRTAP17-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381741,314,912 - 41,315,710 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1741,314,912 - 41,315,710 (-)EnsemblGRCh38hg38GRCh38
GRCh371739,471,164 - 39,471,962 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361736,724,695 - 36,725,473 (-)NCBINCBI36Build 36hg18NCBI36
Build 341736,724,696 - 36,725,473NCBI
Celera1736,124,395 - 36,125,158 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1735,234,681 - 35,235,444 (-)NCBIHuRef
CHM1_11739,706,510 - 39,707,288 (-)NCBICHM1_1
T2T-CHM13v2.01742,170,440 - 42,171,238 (-)NCBIT2T-CHM13v2.0
Krtap17-1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391199,884,058 - 99,884,820 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1199,884,060 - 99,884,820 (-)EnsemblGRCm39 Ensembl
GRCm381199,993,232 - 99,993,994 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1199,993,234 - 99,993,994 (-)EnsemblGRCm38mm10GRCm38
MGSCv371199,854,548 - 99,855,308 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361199,809,678 - 99,812,389 (-)NCBIMGSCv36mm8
MGSCv3611100,771,860 - 100,772,625 (-)NCBIMGSCv36mm8
Celera11110,609,551 - 110,610,311 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1163.34NCBI
Krtap17-1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81085,424,325 - 85,425,039 (-)NCBIGRCr8
mRatBN7.21084,923,920 - 84,924,634 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1084,923,922 - 84,924,634 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01087,927,550 - 87,928,321 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1087,927,539 - 87,928,251 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01087,713,867 - 87,714,703 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1083,643,267 - 83,644,038 (-)NCBICelera
Cytogenetic Map10q31NCBI
LOC102027374
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545115,725,445 - 15,726,702 (-)NCBIChiLan1.0ChiLan1.0
LOC130540924
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21923,668,893 - 23,669,991 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11725,558,873 - 25,559,971 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl1716,218,585 - 16,218,902 (+)Ensemblpanpan1.1panPan2
LOC100685893
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1921,441,307 - 21,442,131 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha920,906,330 - 20,907,654 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0922,165,622 - 22,166,946 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1920,951,501 - 20,952,825 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0921,218,084 - 21,219,408 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0921,324,094 - 21,325,418 (+)NCBIUU_Cfam_GSD_1.0
LOC100514981
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1221,271,580 - 21,271,930 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11221,271,535 - 21,272,347 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21221,346,381 - 21,347,201 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KRTAP17-1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11664,905,527 - 64,907,749 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607735,751,822 - 35,752,607 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101710385
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247952,217,002 - 2,218,391 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005321840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005321840   ⟹   XP_005321897
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560220,795,041 - 20,795,906 (+)NCBI
SpeTri2.0NW_00493649016,279,697 - 16,280,020 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005321897 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000024356.1
GenBank Protein KAG3268983 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005321897   ⟸   XM_005321840
- UniProtKB: A0A287CST6 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000031988 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000042230.1 UniProtKB/TrEMBL
NCBI Gene LOC101956537 ENTREZGENE
UniProt A0A287CST6 ENTREZGENE, UniProtKB/TrEMBL