Dnaaf5 (dynein axonemal assembly factor 5) - Rat Genome Database

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Gene: Dnaaf5 (dynein axonemal assembly factor 5) Ictidomys tridecemlineatus
Analyze
Symbol: Dnaaf5
Name: dynein axonemal assembly factor 5
RGD ID: 12644394
Description: ENCODES a protein that exhibits dynein intermediate chain binding (inferred); INVOLVED IN cilium movement (inferred); inner dynein arm assembly (inferred); outer dynein arm assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); male infertility (ortholog); primary ciliary dyskinesia (ortholog); FOUND IN motile cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dynein assembly factor 5, axonemal; HEAT repeat containing 2; Heatr2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344143,975,601 - 144,031,629 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936754978,737 - 1,034,758 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936754978,726 - 1,034,748 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
motile cilium  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Dnaaf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344143,975,601 - 144,031,629 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936754978,737 - 1,034,758 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936754978,726 - 1,034,748 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAAF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387726,699 - 786,475 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7726,699 - 786,475 (+)EnsemblGRCh38hg38GRCh38
GRCh377766,336 - 826,112 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367732,864 - 792,642 (+)NCBINCBI36Build 36hg18NCBI36
Celera7734,101 - 794,859 (+)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef7685,022 - 744,516 (+)NCBIHuRef
CHM1_17765,930 - 825,538 (+)NCBICHM1_1
T2T-CHM13v2.07829,794 - 889,570 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27827,519 - 884,476 (+)NCBI
Dnaaf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395139,135,888 - 139,172,265 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5139,135,978 - 139,172,265 (+)EnsemblGRCm39 Ensembl
GRCm385139,150,133 - 139,186,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5139,150,223 - 139,186,510 (+)EnsemblGRCm38mm10GRCm38
MGSCv375139,626,177 - 139,662,459 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365139,403,865 - 139,440,147 (+)NCBIMGSCv36mm8
Celera5136,204,057 - 136,240,283 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map578.02NCBI
Dnaaf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81220,567,482 - 20,606,600 (-)NCBIGRCr8
mRatBN7.21215,453,636 - 15,492,722 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1215,453,636 - 15,492,739 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1216,263,773 - 16,302,914 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01216,887,515 - 16,926,655 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01215,913,508 - 15,952,552 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01217,545,468 - 17,584,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1217,545,468 - 17,584,466 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,531,842 - 19,570,964 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41215,955,971 - 15,994,971 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1217,207,707 - 17,246,686 (-)NCBICelera
Cytogenetic Map12q11NCBI
Dnaaf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554608,479,274 - 8,526,342 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554608,479,274 - 8,525,828 (+)NCBIChiLan1.0ChiLan1.0
DNAAF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v265,659,982 - 5,723,017 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1753,980,009 - 54,047,714 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07875,482 - 938,560 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.171,097,336 - 1,155,559 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl71,095,732 - 1,154,740 (+)Ensemblpanpan1.1panPan2
DNAAF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1616,075,099 - 16,121,917 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl616,075,364 - 16,121,917 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha617,546,874 - 17,593,724 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0616,204,601 - 16,251,246 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl616,204,607 - 16,251,246 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1616,007,016 - 16,053,901 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0615,933,474 - 15,980,345 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0616,223,254 - 16,270,084 (-)NCBIUU_Cfam_GSD_1.0
DNAAF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3417,324 - 461,817 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13424,514 - 462,297 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23307,532 - 398,685 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNAAF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12820,785,240 - 20,839,784 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666090841,559 - 898,024 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnaaf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474026,299,742 - 26,362,086 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474026,315,229 - 26,362,086 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000003873   ⟹   ENSSTOP00000003473
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936754978,737 - 1,034,758 (+)Ensembl
RefSeq Acc Id: XM_005339827   ⟹   XP_005339884
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344143,975,601 - 144,031,629 (-)NCBI
SpeTri2.0NW_004936754978,726 - 1,034,748 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040277352   ⟹   XP_040133286
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344143,975,601 - 144,030,315 (-)NCBI
RefSeq Acc Id: XM_040277353   ⟹   XP_040133287
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344143,975,601 - 144,025,250 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005339884 (Get FASTA)   NCBI Sequence Viewer  
  XP_040133286 (Get FASTA)   NCBI Sequence Viewer  
  XP_040133287 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003473.3
GenBank Protein KAG3260157 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005339884   ⟸   XM_005339827
- Peptide Label: isoform X1
- UniProtKB: I3M364 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040133286   ⟸   XM_040277352
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040133287   ⟸   XM_040277353
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000003473   ⟸   ENSSTOT00000003873


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003874 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003873.3 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
NCBI Gene Dnaaf5 ENTREZGENE
PANTHER DYNEIN ASSEMBLY FACTOR 5, AXONEMAL UniProtKB/TrEMBL
  DYNEIN AXONEMAL ASSEMBLY FACTOR 5 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt I3M364 ENTREZGENE, UniProtKB/TrEMBL