Golgb1 (golgin B1) - Rat Genome Database

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Gene: Golgb1 (golgin B1) Ictidomys tridecemlineatus
Analyze
Symbol: Golgb1
Name: golgin B1
RGD ID: 12643365
Description: INVOLVED IN chondrocyte proliferation (ortholog); protein localization to pericentriolar material (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); cleft palate (ortholog); genetic disease (ortholog); FOUND IN cis-Golgi network (inferred); endoplasmic reticulum-Golgi intermediate compartment (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: golgin B1, transcript variant X1; golgin B1, transcript variant X2; golgin B1, transcript variant X3; golgin B1, transcript variant X4; golgin B1, transcript variant X5; golgin subfamily B member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602129,372,227 - 129,436,201 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365368,085,777 - 8,149,986 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365368,085,805 - 8,149,764 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Golgb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602129,372,227 - 129,436,201 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365368,085,777 - 8,149,986 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365368,085,805 - 8,149,764 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLGB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383121,663,201 - 121,749,966 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3121,663,199 - 121,749,966 (-)EnsemblGRCh38hg38GRCh38
GRCh373121,382,048 - 121,468,588 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363122,864,738 - 122,951,292 (-)NCBINCBI36Build 36hg18NCBI36
Build 343122,865,639 - 122,951,292NCBI
Celera3119,792,012 - 119,878,526 (-)NCBICelera
Cytogenetic Map3q13.33NCBI
HuRef3118,756,175 - 118,842,594 (-)NCBIHuRef
CHM1_13121,345,590 - 121,432,070 (-)NCBICHM1_1
T2T-CHM13v2.03124,383,093 - 124,471,671 (-)NCBIT2T-CHM13v2.0
Golgb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391636,695,455 - 36,753,447 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1636,695,502 - 36,753,447 (+)EnsemblGRCm39 Ensembl
GRCm381636,875,093 - 36,933,085 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1636,875,140 - 36,933,085 (+)EnsemblGRCm38mm10GRCm38
MGSCv371636,885,097 - 36,933,171 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361636,793,436 - 36,852,320 (+)NCBIMGSCv36mm8
Celera1637,295,881 - 37,343,987 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1626.19NCBI
Golgb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81177,348,573 - 77,406,165 (-)NCBIGRCr8
mRatBN7.21163,843,179 - 63,900,665 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,843,986 - 63,900,770 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1172,656,395 - 72,713,019 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01165,318,618 - 65,375,243 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,352,928 - 64,409,536 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,761,646 - 66,819,115 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,761,584 - 66,819,079 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01169,852,530 - 69,909,720 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41165,647,305 - 65,703,832 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11165,704,893 - 65,761,421 (-)NCBI
Celera1163,316,713 - 63,373,209 (-)NCBICelera
Cytogenetic Map11q21NCBI
Golgb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542721,021,894 - 21,105,049 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542721,022,369 - 21,108,448 (-)NCBIChiLan1.0ChiLan1.0
GOLGB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22119,620,315 - 119,710,409 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13119,625,092 - 119,715,193 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03118,765,467 - 118,852,005 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13125,673,966 - 125,760,826 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3125,673,966 - 125,760,584 (-)Ensemblpanpan1.1panPan2
GOLGB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13324,927,631 - 25,025,187 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3324,928,729 - 25,025,090 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3324,954,942 - 25,051,736 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03325,170,097 - 25,260,535 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3325,170,101 - 25,260,453 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13324,968,315 - 25,059,017 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03325,010,568 - 25,101,225 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03325,567,702 - 25,658,718 (-)NCBIUU_Cfam_GSD_1.0
GOLGB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13138,754,789 - 138,847,245 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113138,754,803 - 138,847,254 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213148,381,843 - 148,474,839 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GOLGB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12259,124,023 - 59,223,181 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2259,143,188 - 59,223,656 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041107,101,367 - 107,196,704 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Golgb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473126,455,126 - 26,526,316 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473126,438,529 - 26,526,205 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000010030   ⟹   ENSSTOP00000008997
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365368,085,777 - 8,149,986 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000026217   ⟹   ENSSTOP00000015819
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365368,085,777 - 8,149,986 (-)Ensembl
RefSeq Acc Id: XM_005327648   ⟹   XP_005327705
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602129,372,228 - 129,436,201 (+)NCBI
SpeTri2.0NW_0049365368,085,805 - 8,149,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013359708   ⟹   XP_013215162
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602129,372,228 - 129,436,201 (+)NCBI
SpeTri2.0NW_0049365368,085,805 - 8,149,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013359709   ⟹   XP_013215163
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602129,372,228 - 129,436,201 (+)NCBI
SpeTri2.0NW_0049365368,085,805 - 8,149,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021727973   ⟹   XP_021583648
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602129,372,235 - 129,436,201 (+)NCBI
SpeTri2.0NW_0049365368,085,805 - 8,149,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021727974   ⟹   XP_021583649
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602129,372,228 - 129,436,201 (+)NCBI
SpeTri2.0NW_0049365368,085,805 - 8,149,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040270284   ⟹   XP_040126218
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602129,372,227 - 129,423,732 (+)NCBI
RefSeq Acc Id: XP_013215163   ⟸   XM_013359709
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013215162   ⟸   XM_013359708
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005327705   ⟸   XM_005327648
- Peptide Label: isoform X1
- UniProtKB: I3MUM4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021583648   ⟸   XM_021727973
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021583649   ⟸   XM_021727974
- Peptide Label: isoform X5
- UniProtKB: I3MEP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040126218   ⟸   XM_040270284
- Peptide Label: isoform X6
RefSeq Acc Id: ENSSTOP00000008997   ⟸   ENSSTOT00000010030
RefSeq Acc Id: ENSSTOP00000015819   ⟸   ENSSTOT00000026217


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010027 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010030.3 UniProtKB/TrEMBL
  ENSSTOT00000026217.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
  1.20.5.340 UniProtKB/TrEMBL
InterPro GOLGB1 UniProtKB/TrEMBL
NCBI Gene Golgb1 ENTREZGENE
PANTHER GOLGIN SUBFAMILY B MEMBER 1 UniProtKB/TrEMBL
  PTHR18887 UniProtKB/TrEMBL
Superfamily-SCOP Tropomyosin UniProtKB/TrEMBL
UniProt I3MEP5 ENTREZGENE, UniProtKB/TrEMBL
  I3MUM4 ENTREZGENE, UniProtKB/TrEMBL