Mgat3 (beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase) - Rat Genome Database

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Gene: Mgat3 (beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase) Ictidomys tridecemlineatus
Analyze
Symbol: Mgat3
Name: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase
RGD ID: 12642586
Description: ENCODES a protein that exhibits beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (inferred); glycosyltransferase activity (inferred); INVOLVED IN amyloid-beta metabolic process (ortholog); cellular response to oxidative stress (ortholog); cognition (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,134,358 - 9,177,078 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,144,732 - 2,186,871 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,144,775 - 2,149,344 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mgat3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,134,358 - 9,177,078 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,144,732 - 2,186,871 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,144,775 - 2,149,344 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MGAT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382239,457,012 - 39,492,194 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2239,457,012 - 39,492,194 (+)EnsemblGRCh38hg38GRCh38
GRCh372239,853,017 - 39,888,199 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,183,271 - 38,218,145 (+)NCBINCBI36Build 36hg18NCBI36
Build 342238,177,824 - 38,209,939NCBI
Celera2223,655,378 - 23,690,243 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,847,758 - 22,852,697 (+)NCBIHuRef
CHM1_12239,812,132 - 39,846,938 (+)NCBICHM1_1
T2T-CHM13v2.02239,927,644 - 39,962,814 (+)NCBIT2T-CHM13v2.0
Mgat3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391580,057,852 - 80,099,720 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1580,057,922 - 80,099,720 (+)EnsemblGRCm39 Ensembl
GRCm381580,173,651 - 80,215,519 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1580,173,721 - 80,215,519 (+)EnsemblGRCm38mm10GRCm38
MGSCv371580,004,151 - 80,045,949 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361580,001,066 - 80,042,774 (+)NCBIMGSCv36mm8
Celera1582,329,172 - 82,333,729 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
Mgat3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,614,011 - 113,640,201 (+)NCBIGRCr8
mRatBN7.27111,708,353 - 111,761,825 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,675,730 - 111,762,026 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7113,488,109 - 113,514,341 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,711,653 - 115,737,884 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,681,009 - 115,707,241 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,394,541 - 121,436,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,408,829 - 121,435,022 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07121,375,145 - 121,426,932 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47118,429,750 - 118,457,125 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17118,463,979 - 118,491,351 (+)NCBI
Celera7108,062,223 - 108,088,293 (+)NCBICelera
Cytogenetic Map7q34NCBI
Mgat3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541325,360,806 - 25,367,782 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541325,346,135 - 25,367,782 (+)NCBIChiLan1.0ChiLan1.0
MGAT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22349,304,610 - 49,339,435 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,995,998 - 52,030,835 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02220,363,244 - 20,398,471 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12238,194,445 - 38,218,881 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2238,214,029 - 38,215,630 (+)Ensemblpanpan1.1panPan2
MGAT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11025,564,825 - 25,605,787 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1025,568,053 - 25,570,413 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1025,500,650 - 25,547,893 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01026,316,509 - 26,363,783 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11026,031,065 - 26,078,462 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,350,607 - 26,397,843 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01026,526,372 - 26,573,605 (-)NCBIUU_Cfam_GSD_1.0
MGAT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl58,777,965 - 8,807,100 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.158,777,964 - 8,807,144 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,080,556 - 6,092,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MGAT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11922,019,351 - 22,065,551 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1922,060,736 - 22,062,337 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045103,587,311 - 103,624,054 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mgat3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247528,859,596 - 8,891,440 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247528,859,809 - 8,891,344 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000006738   ⟹   ENSSTOP00000006026
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364922,144,732 - 2,186,871 (-)Ensembl
RefSeq Acc Id: XM_005322236   ⟹   XP_005322293
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049459,134,358 - 9,158,895 (-)NCBI
SpeTri2.0NW_0049364922,144,775 - 2,149,344 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040277778   ⟹   XP_040133712
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049459,134,358 - 9,141,380 (-)NCBI
RefSeq Acc Id: XM_040277782   ⟹   XP_040133716
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049459,134,358 - 9,176,444 (-)NCBI
RefSeq Acc Id: XM_040277785   ⟹   XP_040133719
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049459,134,358 - 9,139,773 (-)NCBI
RefSeq Acc Id: XM_040277789   ⟹   XP_040133723
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049459,134,358 - 9,177,078 (-)NCBI
RefSeq Acc Id: XM_040277795   ⟹   XP_040133729
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049459,134,358 - 9,147,967 (-)NCBI
RefSeq Acc Id: XM_040277798   ⟹   XP_040133732
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049459,134,358 - 9,141,226 (-)NCBI
RefSeq Acc Id: XM_040277803   ⟹   XP_040133737
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049459,134,358 - 9,141,384 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005322293   ⟸   XM_005322236
- Peptide Label: isoform X1
- UniProtKB: I3M8F8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040133723   ⟸   XM_040277789
- Peptide Label: isoform X1
- UniProtKB: I3M8F8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040133716   ⟸   XM_040277782
- Peptide Label: isoform X1
- UniProtKB: I3M8F8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040133729   ⟸   XM_040277795
- Peptide Label: isoform X1
- UniProtKB: I3M8F8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040133737   ⟸   XM_040277803
- Peptide Label: isoform X1
- UniProtKB: I3M8F8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040133712   ⟸   XM_040277778
- Peptide Label: isoform X1
- UniProtKB: I3M8F8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040133732   ⟸   XM_040277798
- Peptide Label: isoform X1
- UniProtKB: I3M8F8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040133719   ⟸   XM_040277785
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000006026   ⟸   ENSSTOT00000006738


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006745 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006738.3 UniProtKB/TrEMBL
InterPro Glyco_trans_17 UniProtKB/TrEMBL
NCBI Gene Mgat3 ENTREZGENE
PANTHER BETA-1,4-MANNOSYL-GLYCOPROTEIN 4-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  PTHR12224 UniProtKB/TrEMBL
Pfam Glyco_transf_17 UniProtKB/TrEMBL
UniProt I3M8F8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-03 Mgat3  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase  Mgat3  mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase  Symbol and/or name change 5135510 APPROVED