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Gene: Col4a1 (collagen type IV alpha 1 chain) Ictidomys tridecemlineatus

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Symbol:

Col4a1

Name:

collagen type IV alpha 1 chain

RGD ID:

12642368

Description:

ENCODES a protein that exhibits extracellular matrix structural constituent (inferred); extracellular matrix structural constituent conferring tensile strength (inferred); platelet-derived growth factor binding (inferred); INVOLVED IN cellular response to amino acid stimulus (ortholog); collagen-activated tyrosine kinase receptor signaling pathway (ortholog); epithelial cell differentiation (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); anterior segment dysgenesis (ortholog); FOUND IN basement membrane (inferred); collagen trimer (inferred); collagen type IV trimer (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

collagen alpha-1(IV) chain

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	193,408,026 - 193,536,112 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	2,416,566 - 2,542,814 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	2,416,043 - 2,543,561 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Agenesis of Corpus Callosum (ISO)

Anal Atresia, Hypospadias, and Penoscrotal Inversion (ISO)

anterior segment dysgenesis (ISO)

Axenfeld-Rieger syndrome (ISO)

brain small vessel disease (ISO)

brain small vessel disease 1 (ISO)

brain small vessel disease 2 (ISO)

CAKUT (ISO)

cataract (ISO)

Central Nervous System Vascular Malformations (ISO)

Cerebral Hemorrhage (ISO)

cerebral palsy (ISO)

chronic kidney disease (ISO)

Diabetic Nephropathies (ISO)

diastolic heart failure (ISO)

epilepsy (ISO)

Experimental Liver Cirrhosis (ISO)

Eye Abnormalities (ISO)

factor X deficiency (ISO)

focal segmental glomerulosclerosis (ISO)

genetic disease (ISO)

hemolytic anemia (ISO)

Hereditary Angiopathy with Nephropathy, Aneurysms, and Muscle Cramps (ISO)

Intracranial Hemorrhages (ISO)

Intraventricular Hemorrhage (ISO)

keratoconus (ISO)

kidney disease (ISO)

Leukoencephalopathies (ISO)

microcephaly (ISO)

myocardial infarction (ISO)

nephrotic syndrome (ISO)

NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, ARTHROGRYPOSIS, AND STRUCTURAL BRAIN ANOMALIES (ISO)

obesity (ISO)

Peters anomaly (ISO)

Pontine Microangiopathy and Leukoencephalopathy, Autosomal Dominant (ISO)

porencephaly (ISO)

pulmonary hypertension (ISO)

retinal arterial tortuosity (ISO)

Schizencephaly (ISO)

Stroke (ISO)

uterine fibroid (ISO)

vascular dementia (ISO)

Walker-Warburg syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

basement membrane organization (IEA)

blood vessel morphogenesis (IEA)

brain development (IEA)

branching involved in blood vessel morphogenesis (IEA)

cellular response to amino acid stimulus (IEA,ISO)

collagen-activated tyrosine kinase receptor signaling pathway (IEA,ISO)

epithelial cell differentiation (ISO)

extracellular matrix organization (IEA)

neuromuscular junction development (IEA,ISO)

renal tubule morphogenesis (IEA)

retinal blood vessel morphogenesis (IEA)

Cellular Component

basement membrane (IEA)

collagen trimer (IEA)

collagen type IV trimer (IEA)

collagen-containing extracellular matrix (IEA)

extracellular region (IEA)

extracellular space (IEA)

Molecular Function

extracellular matrix structural constituent (IEA)

extracellular matrix structural constituent conferring tensile strength (IEA)

platelet-derived growth factor binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

syndecan signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Col4a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	193,408,026 - 193,536,112 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	2,416,566 - 2,542,814 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	2,416,043 - 2,543,561 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COL4A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	110,148,963 - 110,307,157 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	110,148,963 - 110,307,202 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	110,801,310 - 110,959,504 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	109,599,311 - 109,757,497 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	109,599,311 - 109,757,459	NCBI
Celera	13	91,645,588 - 91,803,669 (-)	NCBI		Celera
Cytogenetic Map	13	q34	NCBI
HuRef	13	91,400,456 - 91,558,957 (-)	NCBI		HuRef
CHM1_1	13	110,770,028 - 110,927,927 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	109,377,773 - 109,536,621 (-)	NCBI		T2T-CHM13v2.0

Col4a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	11,248,423 - 11,362,889 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	11,248,423 - 11,362,826 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	11,198,423 - 11,312,889 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	11,198,423 - 11,312,826 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	11,198,423 - 11,312,826 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	11,198,403 - 11,312,702 (-)	NCBI		MGSCv36	mm8
Celera	8	11,372,057 - 11,487,438 (-)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	5.53	NCBI

Col4a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	84,885,597 - 84,996,482 (+)	NCBI		GRCr8
mRatBN7.2	16	78,183,533 - 78,294,412 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	78,183,533 - 78,294,412 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	83,463,953 - 83,574,826 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	86,916,625 - 87,027,510 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	82,157,396 - 82,268,610 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	83,522,162 - 83,632,153 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	83,522,162 - 83,632,153 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	82,987,857 - 83,097,435 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	83,045,183 - 83,157,835 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	83,031,106 - 83,143,679 (+)	NCBI
Celera	16	75,981,231 - 76,092,476 (+)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

Col4a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955404	2,260,029 - 2,326,074 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955404	2,196,193 - 2,327,324 (+)	NCBI	ChiLan1.0	ChiLan1.0

COL4A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	111,642,358 - 111,800,305 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	110,324,917 - 110,482,747 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	91,282,617 - 91,440,187 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	110,407,009 - 110,562,529 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	110,407,009 - 110,562,529 (-)	Ensembl	panpan1.1		panPan2

COL4A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	58,511,210 - 58,651,949 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	58,512,212 - 58,588,666 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	58,264,155 - 58,360,735 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	59,132,853 - 59,274,724 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	59,133,398 - 59,274,709 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	58,634,288 - 58,774,752 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	58,625,802 - 58,767,327 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	58,660,825 - 58,801,735 (-)	NCBI		UU_Cfam_GSD_1.0

COL4A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	76,858,356 - 76,997,322 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	76,858,332 - 76,997,409 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	84,372,388 - 84,460,293 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COL4A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	88,410,800 - 88,564,191 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	88,412,168 - 88,564,057 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666046	45,126,545 - 45,280,009 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Col4a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624793	2,325,128 - 2,426,817 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624793	2,325,104 - 2,426,814 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005317129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000004305 ⟹ ENSSTOP00000003864

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936472	2,416,566 - 2,542,814 (+)	Ensembl

RefSeq Acc Id:

XM_005317129 ⟹ XP_005317186

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	193,408,026 - 193,536,112 (-)	NCBI
SpeTri2.0	NW_004936472	2,416,043 - 2,543,561 (+)	NCBI

Sequence:

show sequence

ATGCCGCCTGGGGGTCGCTCTCACCTCGGGTTCGGTCGTCAGGGGCTGCTGCCTACGCGCATTG
GCCCCTCCAGAAGCGCCCGCCGCGGCACAACACCAGCGCCGCTGGCCTCGCTGGGCGCTGGCCT
CCGGGGCCCGGGCGTCCGCTCGCGGTCCTCGGCCCGGACCCAAGGCTCAGGGGATCCGGGCGCT
AGAGCCCCTGAGTGCAGAGTGTGGAGCACTGGTGCCCCGATTCGCGGCAAGCGCAATTCCCGAG
CTGCGCGCTCCCGCCGCCTCTCACCCGCCCTGCAGGGTCCTCCCCTTAGAGACGCCGCCCGCGC
CCTGCCTAGGGGAGGGGGCGGCGCCAACAAATTGAGCTCGAGCGGCCGCGCGCAAGTCTCCGCT
CCGAGCCGCCGCGCCCGGGACGGTGCGCAGCGCTCACACCCCAGCCCTCCGAGAGTCGCCCTTC
TGCTCCACGAGGAGCGCAGCCGGGCCGCTGCGAAGGGTGGTTGTGATGGCTCTGGCTGCGGAAA
ATGTGACTGCCATGGAGTGAAGGGACAAAAGGGGGAACGAGGTCTCCCAGGGCTACAAGGTGTC
ATTGGGTTTCCTGGAATGCAAGGACCCGAGGGGCCGCAGGGACCACCGGGACAGAAGGGTGATA
CTGGAGAACCTGGACTTCCTGGCACAAAAGGGACAAGAGGACCCCCAGGAGCAGCTGGCTACCC
GGGAAACCCAGGACTTCCGGGTATTCCTGGCCAAGATGGTCCCCCAGGTCCCCCAGGTATCCCA
GGATGCAACGGTACCAAAGGAGAGAGAGGACCACTTGGGCCTCCTGGTTTGCCTGGATTCTCTG
GAAATCCTGGACCACCAGGGTTACCTGGAATGAAGGGGGATCCAGGTGAAATACTGGGCTTCGG
CTACGTGCCTGGGATGCTGTTGAAAGGGGAAAGAGGATTTCCTGGCGCCCCCGGGATTCCAGGC
TCGCCGGGATTGCCAGGACTGCAGGGACCCGTTGGCCCTCCAGGATTTACTGGACCACCAGGCC
CCCCGGGTCCTCCTGGGCCTCCAGGTGAAAAGGGACAAATGGGCTCAAGTTTTCAAGGACCAAA
AGGTGACAAGGGTGACCAAGGTGTCAGTGGGCCTCCCGGGATGCCAGGACAGGCACAAGTTAAA
GAAAAAGGGGACTTTGCCCCGACGGGAGAAAAGGGTCAAAAAGGTGAACCTGGATTTCAGGGGA
TACCAGGGATTGGCGAGAAGGGCGAACCCGGAAAGCCAGGGCCTCGGGGAAAACCTGGAAAAGA
TGGTGACAAAGGAGAGAAAGGGAGTCCGGGCTTTCCAGGCGAGCCAGGGTACCCGGGACTCCCC
GGCCCGCAGGGCCCTCAGGGAGACAAAGGTGCAGCCGGTCCTCCGGGCCCCCCTGGAATTGTTA
TAGGCACAGGACCTCTGGGAGAAAAAGGGGAGCGAGGCTACCCAGGGGCTCCCGGGCTGAGAGG
AGAGCCAGGCCCGAAAGGTTACCCGGGATTACAAGGCCAGCCGGGCCCCCCAGGCTTCCCTGTA
TCTGGACAGCCTGGTGCTCCCGGCTTCCCCGGAGAAAGAGGAGAAAAAGGAGACCAAGGATATC
CAGGAACATCTTTGCCAGGGCTGAGCGGAAAGGATGGAGTCCCAGGCCCCCCAGGTCTCCCTGG
ACCCCCTGGGCAGCCAGGACACACAAATGGCATCGTGGAATGTCAGCCTGGACCACCTGGTGAT
CAGGGTCCTCCTGGGACTCCAGGGCAGCCAGGGTTGACAGGAGAGGTGGGAGAAAAAGGTCAGA
AAGGAGACAGCTGCCTCATCTGTGACACAGAAGGACTTCGAGGGCCGCCCGGGCCACAGGGTCC
CCCAGGAGAAATCGGTTTTCCAGGACAGCCAGGGGCCAAGGGCGACAGAGGTCTACCCGGCAGG
GATGGTCTTGAAGGATTGCCTGGGCCTCAAGGTGCACCAGGGCTGATGGGCCCGCCCGGCGCCA
AGGGAGAGCCTGGCGAGATTTACTTCGACATGCGACTCAAAGGCGACAAAGGAGACCCCGGCTT
CCCAGGACAGCCCGGCATGCCAGGGAGAGCAGGGTCCCCTGGGAGAGACGGCCATCCAGGTCTT
CCAGGCCCCAAGGGTTCCCCGGGCTCCGTGGGATTGAAGGGAGAACGTGGTCCCCCTGGAGGAG
CTGGCTTTCCCGGCAGCCGTGGTGACATCGGCCCCCCCGGGCCTCCCGGATTTGGTCCTATTGG
TCCTGTTGGTGACAAAGGACAACCAGGTTTTCCTGGAAACCCTGGGTCCCCTGGCCTGCCAGGT
CCCAAGGGTGAAGCAGGCAAGGTGGTCCCCTTACCTGGACCCCCAGGAGCAGAGGGCCTCCCAG
GGTCCCCGGGATTCCCAGGGCCCCAAGGTGACCGAGGCTTCCCTGGAACCCCTGGACGGCCAGG
CCTCCCAGGAGAGAAGGGCTCTGTAGGCCAGCCGGGGATTGGATTTCCTGGGCCTCCCGGCCCC
AAAGGTGTCGATGGCTTACCTGGAGACGTGGGCACTCCCGGGAGTCCAGGTCGCCCAGGGTTTA
ATGGCTTACCTGGCAGCCCCGGTTTGCAGGGCCAGAAGGGAGAACCTGGCATTGGTCTGCCAGG
ACTCAAGGGACTTCCAGGTCTTCCCGGCATTCCTGGCACACCGGGGGAGAAAGGCAACATCGGA
GGACCAGGCGTTCCTGGAGAACACGGGGCCATCGGCCCACCTGGGCTTCAAGGGATCAGAGGTG
ACCCCGGACCCCCTGGAGTACAAGGCCCAGCAGGACCCCCTGGAGCTCCCGGAATAGGCCCCCC
TGGAGTTATGGGCCCGCCTGGAGGGCAGGGACCACCAGGGTCATCAGGTCCCCCTGGAGTGAAA
GGCGAGAAAGGCTTCCCTGGATTCCCAGGCCTCGACATGCCCGGCCCTAAAGGAGACAAAGGCT
CCCAAGGACTTCCCGGCCTCACAGGACAGTCAGGGCTGCCTGGCCTCCCCGGACAGCAGGGCAC
ACCTGGAATTCCAGGGTTCCCAGGTCCCAAGGGAGAAATGGGTGTCATGGGGACCCCAGGACAG
CCAGGCTCACCAGGACCTGCAGGTGCCCCAGGACTGCCTGGAGAAAAAGGGGACCACGGCTTCC
CAGGCTCCTCAGGACCCAGGGGGGACCCTGGCTTCAAAGGCGACAAAGGGGACGTTGGGCTCCC
TGGAAAACCCGGGTCTATGGAGAAAGTGGACATGGGCAGCATGAAGGGACAGAAGGGAGACCAA
GGAGAAAAAGGACAAATTGGACCCACTGGTGACAAAGGATCCCGAGGAGACCCTGGGACGCCAG
GAGTGCCTGGGAAGGATGGGCAGGCTGGGCACCCCGGACAGCCAGGACCTAAGGGTGACCCCGG
CGTAAGTGGAACACCAGGGGCTCCAGGACTCCCTGGACCGAAAGGAGCGGTTGGTGGCATGGGC
TTGCCAGGAACACCTGGGGAAAAGGGCGTGCCTGGCATCCCCGGCCCACAGGGCGTCCCCGGCT
TGCCTGGAGAGAAAGGGGCCAAAGGAGAGAAGGGGCAGGCAGGTCTGCCCGGCGTTGGGATTCC
TGGGCGGCCTGGCGACAAGGGAGACCAGGGAGCAGCAGGGTTCCCGGGAAGCCCTGGCGAGAAG
GGCGAGAAGGGCAGCATCGGGATTCCGGGAATGCCGGGGTCTCCGGGCCCCAAGGGGTCTCCAG
GGAGCGTTGGTTACCCAGGAAGCCCTGGGTTGCCTGGAGAGAAGGGTGACAAAGGCCTTCCAGG
ACTGGACGGTGTCCCTGGTGTCAAAGGAGAAGCAGGTCTTCCTGGGCAGCCTGGCCCCACAGGC
CCAGCCGGACAGAAAGGGGAGCCAGGCAGTGACGGAATTCCAGGATCCGCAGGAGAGAAGGGCG
AACCAGGTCTACCAGGAAGAGGGTTCCCCGGGTTTCCAGGGAGCAAAGGAGACAAAGGTTCAAA
GGGAGAAGTGGGTTTCCCTGGATTAGCTGGGAGTCCCGGAATTCCTGGACCCAAAGGCGAGCAA
GGATTCATGGGCCCTCCGGGGCCCCAAGGACAGCCAGGCTTACCAGGCACTCCCGGCCGCCCCG
TGGAGGGACCCAAAGGGGACCGAGGACCTCAGGGACAACCTGGCCTGCCAGGGCTTCCGGGACC
CATGGGGCCTCCAGGGCTTCCTGGGCTTGACGGGCTGAAGGGTGACAAGGGAAATCCAGGATGG
CCAGGAGCACCCGGCATTCCGGGGCCCAAGGGAGACCCAGGGTTCCAGGGCATGCCGGGCATTG
GCGGCTCTCCTGGACTCACAGGTTCCAAGGGTGATATGGGGCCTCCGGGAGTTCCAGGATTTCA
AGGTCAAAAGGGTCTTCCTGGCCTCCAGGGGCTGAAGGGCGATCAGGGAGATCAAGGCGTCCCC
GGCCCTAAAGGTCTCCCAGGCCCCCCTGGCCCTCCAGGTCCTTACGATATCATCAAGGGGGAGC
CAGGACTCCCTGGTCCTGAGGGTCCGCCAGGTCTGAAAGGGCTCCAGGGCCCTCCGGGTCCCAA
AGGGCAGCAAGGTGTGGCCGGCTCGGTGGGCTTGCCTGGACCCCCAGGTGCTCCTGGCTTTGAC
GGTGCCCCTGGCCAGAAAGGAGAGACGGGACCTTTCGGGCCTCCTGGTCCAAGAGGGTTTCCTG
GCCCACCCGGCCCTGATGGATTGCCAGGATCCATGGGACCCCCAGGCACCCCATCCGTCGACCA
CGGCTTCCTCGTGACCAGGCACAGTCAGACAACAGATGACCCATCATGTCCTCCTGGGACCAAG
ATCCTTTACCACGGGTACTCCCTTCTCTACGTGCAGGGGAACGAGCGAGCCCACGGCCAGGATC
TGGGCACGGCCGGCAGCTGCCTGCGCAAGTTCAGCACGATGCCCTTCCTGTTCTGCAACATCAA
CAACGTGTGCAACTTCGCCTCCCGCAACGACTACTCCTACTGGCTGTCCACGCCGGAGCCCATG
CCCATGTCCATGGCGCCCATCACTGGGGACAACATCCGGCCGTTTATCAGCAGATGTGCCGTGT
GCGAGGCACCAGCCATGGTGATGGCGGTGCATAGTCAGACCATTCAGATCCCGCAGTGCCCCAA
CGGGTGGTCGTCGCTGTGGATTGGCTATTCCTTCGTGATGCACACCAGTGCTGGTGCTGAAGGT
TCTGGCCAAGCCCTGGCGTCCCCCGGCTCCTGTCTGGAAGAGTTCAGAAGCGCACCGTTCATCG
AGTGCCACGGCCGTGGGACTTGTAATTACTATGCAAACGCTTACAGCTTTTGGCTCGCCACCAT
AGAGAGAAGCGAGATGTTCAAGAAGCCCACACCATCCACCTTGAAGGCAGGGGAGCTACGCACA
CACGTCAGCCGCTGCCAAGTTTGTATGAGAAGAACATAATGAAGCCTGACCCTCAGCTACCGTC
ACGACATGGTGCTACTCCTCCTCCTCCTCCTCCTCCTTTCTTTTTATTTTTAACAGCAACGAAC
CCTAGAAATATATCCTGTGTACCTCACTGTCCAATATGAAAACCATAAAGTGCCTTATAGGAAT
TCGCGTAACTAACACACCTGCTTCATTGGTCTCTATTGCTGAAGGAGAAAAGGACAAGGATAGG
CTTTCCATAGTGGCATACCAATGGCACTTTTGATGAAATGAAATGTAAGTCCACCTGCAACCCA
GTGCACTGATGTGTGAGGCGAGAACTCCATTGGAAACCAAAGGTGCTAGGGGTGTGCGGCGCCT
CCGCGCTCTCCACTGCCCACGTTCATCCTGTGTTGTACCAGAGGACTGTCCCCCAGATCTGCCT
GACTGTTTACCACTGTCCAGTGTTTCAAAATCCAGGTCCCTCGGTCTGTGCAAGTCATAGTAGT
GTAAAGCCAGTTTCTTCAAACCTCCAAATGGAATTACGGACACAGTACCATCTCTTCCAACCCC
CCAAACAGAACTCTGTCTCTGCTCTGTGTGGTACTATGCAGCTGCTTTTGCAGAAATTACAACT
TTCCTGTGGAATAAAGATGGTCCAAAAGTAGTCAGAAGTGAAATATATATATATTTTAGTAATT
TATATAGATGTCAGCAATTAGGCAGGTCAAGTTCTAGTGTAACTTCCACTGTTAAAATAAAGCT
TACCTAGTTTCCTTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005317186	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000003864.3
GenBank Protein	KAG3293402	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005317186 ⟸ XM_005317129

- Sequence:

show sequence

MPPGGRSHLGFGRQGLLPTRIGPSRSARRGTTPAPLASLGAGLRGPGVRSRSSARTQGSGDPGA
RAPECRVWSTGAPIRGKRNSRAARSRRLSPALQGPPLRDAARALPRGGGGANKLSSSGRAQVSA
PSRRARDGAQRSHPSPPRVALLLHEERSRAAAKGGCDGSGCGKCDCHGVKGQKGERGLPGLQGV
IGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGAAGYPGNPGLPGIPGQDGPPGPPGIP
GCNGTKGERGPLGPPGLPGFSGNPGPPGLPGMKGDPGEILGFGYVPGMLLKGERGFPGAPGIPG
SPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGSSFQGPKGDKGDQGVSGPPGMPGQAQVK
EKGDFAPTGEKGQKGEPGFQGIPGIGEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLP
GPQGPQGDKGAAGPPGPPGIVIGTGPLGEKGERGYPGAPGLRGEPGPKGYPGLQGQPGPPGFPV
SGQPGAPGFPGERGEKGDQGYPGTSLPGLSGKDGVPGPPGLPGPPGQPGHTNGIVECQPGPPGD
QGPPGTPGQPGLTGEVGEKGQKGDSCLICDTEGLRGPPGPQGPPGEIGFPGQPGAKGDRGLPGR
DGLEGLPGPQGAPGLMGPPGAKGEPGEIYFDMRLKGDKGDPGFPGQPGMPGRAGSPGRDGHPGL
PGPKGSPGSVGLKGERGPPGGAGFPGSRGDIGPPGPPGFGPIGPVGDKGQPGFPGNPGSPGLPG
PKGEAGKVVPLPGPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKGSVGQPGIGFPGPPGP
KGVDGLPGDVGTPGSPGRPGFNGLPGSPGLQGQKGEPGIGLPGLKGLPGLPGIPGTPGEKGNIG
GPGVPGEHGAIGPPGLQGIRGDPGPPGVQGPAGPPGAPGIGPPGVMGPPGGQGPPGSSGPPGVK
GEKGFPGFPGLDMPGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGIPGFPGPKGEMGVMGTPGQ
PGSPGPAGAPGLPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMEKVDMGSMKGQKGDQ
GEKGQIGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGVSGTPGAPGLPGPKGAVGGMG
LPGTPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQAGLPGVGIPGRPGDKGDQGAAGFPGSPGEK
GEKGSIGIPGMPGSPGPKGSPGSVGYPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGQPGPTG
PAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGSKGDKGSKGEVGFPGLAGSPGIPGPKGEQ
GFMGPPGPQGQPGLPGTPGRPVEGPKGDRGPQGQPGLPGLPGPMGPPGLPGLDGLKGDKGNPGW
PGAPGIPGPKGDPGFQGMPGIGGSPGLTGSKGDMGPPGVPGFQGQKGLPGLQGLKGDQGDQGVP
GPKGLPGPPGPPGPYDIIKGEPGLPGPEGPPGLKGLQGPPGPKGQQGVAGSVGLPGPPGAPGFD
GAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGTPSVDHGFLVTRHSQTTDDPSCPPGTK
ILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPM
PMSMAPITGDNIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPNGWSSLWIGYSFVMHTSAGAEG
SGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRT
HVSRCQVCMRRT

hide sequence

Ensembl Acc Id:

ENSSTOP00000003864 ⟸ ENSSTOT00000004305

Protein Domains

Collagen IV NC1

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000004254	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000004305.3	UniProtKB/TrEMBL
Gene3D-CATH	2.170.240.10	UniProtKB/TrEMBL
InterPro	Collagen	UniProtKB/TrEMBL
	Collagen_IV_NC	UniProtKB/TrEMBL
	Collagen_IV_NC_sf	UniProtKB/TrEMBL
	Collagen_superfamily	UniProtKB/TrEMBL
	CTDL_fold	UniProtKB/TrEMBL
NCBI Gene	Col4a1	ENTREZGENE
PANTHER	COLLAGEN	UniProtKB/TrEMBL
	COLLAGEN ALPHA	UniProtKB/TrEMBL
Pfam	Collagen	UniProtKB/TrEMBL
	PF01413	UniProtKB/TrEMBL
PROSITE	NC1_IV	UniProtKB/TrEMBL
SMART	SM00111	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56436	UniProtKB/TrEMBL
UniProt	I3M3Z8_ICTTR	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)