Srsf6 (serine and arginine rich splicing factor 6) - Rat Genome Database

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Gene: Srsf6 (serine and arginine rich splicing factor 6) Ictidomys tridecemlineatus
Analyze
Symbol: Srsf6
Name: serine and arginine rich splicing factor 6
RGD ID: 12642169
Description: ENCODES a protein that exhibits pre-mRNA binding (inferred); RNA binding (inferred); INVOLVED IN negative regulation of gene expression (ortholog); negative regulation of type B pancreatic cell apoptotic process (ortholog); positive regulation of epithelial cell proliferation involved in lung morphogenesis (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH clear cell renal cell carcinoma (ortholog); colon adenocarcinoma (ortholog); Epidermal Hyperplasia (ortholog); FOUND IN nuclear speck (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/arginine-rich splicing factor 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640180,213,648 - 180,219,277 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365303,086,680 - 3,092,828 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365303,086,944 - 3,092,780 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Srsf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640180,213,648 - 180,219,277 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365303,086,680 - 3,092,828 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365303,086,944 - 3,092,780 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRSF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382043,457,896 - 43,464,243 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2043,457,893 - 43,466,046 (+)EnsemblGRCh38hg38GRCh38
GRCh372042,086,536 - 42,092,883 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362041,519,932 - 41,525,655 (+)NCBINCBI36Build 36hg18NCBI36
Build 342041,519,931 - 41,525,655NCBI
Celera2038,793,993 - 38,799,734 (+)NCBICelera
Cytogenetic Map20q13.11NCBI
HuRef2038,822,762 - 38,828,474 (+)NCBIHuRef
CHM1_12041,990,350 - 41,996,091 (+)NCBICHM1_1
T2T-CHM13v2.02045,191,165 - 45,197,503 (+)NCBIT2T-CHM13v2.0
Srsf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392162,773,428 - 162,779,041 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2162,773,448 - 162,779,041 (+)EnsemblGRCm39 Ensembl
GRCm382162,931,508 - 162,937,121 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2162,931,528 - 162,937,121 (+)EnsemblGRCm38mm10GRCm38
MGSCv372162,757,244 - 162,762,857 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362162,622,982 - 162,628,562 (+)NCBIMGSCv36mm8
Celera2168,878,554 - 168,884,169 (+)NCBICelera
Cytogenetic Map2H2NCBI
cM Map283.87NCBI
Srsf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83172,009,072 - 172,014,395 (+)NCBIGRCr8
mRatBN7.23151,589,546 - 151,594,869 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3151,589,535 - 151,594,860 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3155,397,888 - 155,403,214 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03163,896,848 - 163,902,174 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03161,640,441 - 161,645,767 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03159,305,345 - 159,310,668 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3159,305,345 - 159,310,668 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03165,502,385 - 165,507,708 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43153,795,483 - 153,799,026 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13153,701,518 - 153,705,060 (+)NCBI
Celera3150,247,637 - 150,252,960 (+)NCBICelera
Cytogenetic Map3q42NCBI
Srsf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544513,661,209 - 13,669,102 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544513,663,474 - 13,669,102 (-)NCBIChiLan1.0ChiLan1.0
SRSF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22149,193,875 - 49,203,175 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12049,186,976 - 49,196,276 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02039,795,659 - 39,801,864 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12040,888,396 - 40,892,152 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2040,888,560 - 40,891,853 (+)Ensemblpanpan1.1panPan2
SRSF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12431,217,190 - 31,222,852 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2431,217,184 - 31,218,618 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2430,860,739 - 30,866,500 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02431,924,806 - 31,930,549 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2431,924,822 - 31,930,549 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12431,188,536 - 31,194,277 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02431,299,944 - 31,305,686 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02431,840,352 - 31,846,095 (+)NCBIUU_Cfam_GSD_1.0
SRSF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1746,119,409 - 46,125,126 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11746,119,612 - 46,122,540 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21751,513,133 - 51,516,063 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRSF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1220,340,163 - 20,345,873 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl220,342,681 - 20,346,122 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605069,083,496 - 69,089,235 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srsf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479010,812,013 - 10,817,833 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479010,812,013 - 10,817,414 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005327131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000010867   ⟹   ENSSTOP00000009749
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365303,086,680 - 3,092,828 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000031027   ⟹   ENSSTOP00000029678
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365303,091,114 - 3,092,402 (-)Ensembl
RefSeq Acc Id: XM_005327131   ⟹   XP_005327188
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640180,213,648 - 180,219,277 (+)NCBI
SpeTri2.0NW_0049365303,086,944 - 3,092,780 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005327188 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000009749.2
  ENSSTOP00000029678.1
GenBank Protein KAG3263290 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005327188   ⟸   XM_005327131
- UniProtKB: I3MG92 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000009749   ⟸   ENSSTOT00000010867
Ensembl Acc Id: ENSSTOP00000029678   ⟸   ENSSTOT00000031027
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010866 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010867.3 UniProtKB/TrEMBL
  ENSSTOT00000031027.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  SRSF6_RRM1 UniProtKB/TrEMBL
NCBI Gene Srsf6 ENTREZGENE
PANTHER RIBONUCLEOPROTEIN RB97D UniProtKB/TrEMBL
  RIBONUCLEOPROTEIN RB97D UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A287D817_ICTTR UniProtKB/TrEMBL
  I3MG92 ENTREZGENE, UniProtKB/TrEMBL