Rbm23 (RNA binding motif protein 23)

Gene: Rbm23 (RNA binding motif protein 23) Ictidomys tridecemlineatus

Analyze

Symbol:

Rbm23

Name:

RNA binding motif protein 23

RGD ID:

12640549

Description:

ENCODES a protein that exhibits RNA binding (inferred); U1 snRNP binding (inferred); INVOLVED IN mRNA processing (inferred); positive regulation of DNA-templated transcription (inferred); regulation of mRNA splicing, via spliceosome (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); lysinuric protein intolerance (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

probable RNA-binding protein 23; RNA binding motif protein 23, transcript variant X1; RNA binding motif protein 23, transcript variant X2; RNA binding motif protein 23, transcript variant X3; RNA binding motif protein 23, transcript variant X4; RNA binding motif protein 23, transcript variant X5

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	34,986,505 - 34,999,454 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936722	1,397,697 - 1,401,372 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936722	1,389,534 - 1,402,487 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain-Lung-Thyroid Syndrome (ISO)

genetic disease (ISO)

lysinuric protein intolerance (ISO)

Specific Granule Deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (IEA)

positive regulation of DNA-templated transcription (IEA)

regulation of mRNA splicing, via spliceosome (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

protein binding (ISO)

RNA binding (IEA)

U1 snRNP binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Rbm23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	34,986,505 - 34,999,454 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936722	1,397,697 - 1,401,372 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936722	1,389,534 - 1,402,487 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBM23
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	22,893,204 - 22,919,149 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	22,893,204 - 22,919,182 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	23,362,413 - 23,388,358 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	22,439,694 - 22,458,236 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	22,439,816 - 22,458,214	NCBI
Celera	14	3,232,750 - 3,251,295 (-)	NCBI		Celera
Cytogenetic Map	14	q11.2	NCBI
HuRef	14	3,486,930 - 3,505,430 (-)	NCBI		HuRef
CHM1_1	14	23,368,494 - 23,387,016 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	17,091,268 - 17,117,229 (-)	NCBI		T2T-CHM13v2.0

Rbm23
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955409	37,384,872 - 37,392,896 (+)	NCBI	ChiLan1.0	ChiLan1.0

RBM23
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	24,330,124 - 24,349,033 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	23,546,974 - 23,565,506 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	3,710,492 - 3,736,415 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	21,817,434 - 21,835,661 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	21,817,434 - 21,835,668 (-)	Ensembl	panpan1.1		panPan2

RBM23
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	3,233,715 - 3,247,014 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	3,234,859 - 3,246,981 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	3,182,057 - 3,195,368 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	3,341,529 - 3,354,837 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	3,341,596 - 3,354,844 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	3,032,776 - 3,046,090 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	3,094,555 - 3,107,620 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	3,356,542 - 3,369,875 (-)	NCBI		UU_Cfam_GSD_1.0

RBM23
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	76,124,944 - 76,136,596 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	76,120,725 - 76,132,148 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RBM23
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	23,267,941 - 23,287,097 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	23,267,944 - 23,287,166 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	23,133,747 - 23,154,183 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbm23
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624820	9,610,274 - 9,624,523 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005338785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000010367 ⟹ ENSSTOP00000009304

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936722	1,397,697 - 1,401,372 (+)	Ensembl

RefSeq Acc Id:

XM_005338785 ⟹ XP_005338842

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	34,987,620 - 34,999,454 (-)	NCBI
SpeTri2.0	NW_004936722	1,389,534 - 1,401,372 (+)	NCBI

Sequence:

show sequence

TCTTTCCGGCGCATGCGCAGATTGCGGAAGGTTCTGGAAGATAGCTGAGGTGCCGCCATTTTGC
GGGAAGAGGAGCAGGTCTGACTGCTGTGCTGCTTTTTTAGCTGAGACCGTAGGATATAGCTGAG
CTTCGCGCCCCACACACACCTAAAGGAACGGAGAGAACCGGGACCCCCCTGCGGGGACCCGGAA
CTGATCTGACACGATGGCATCTGATGACTTTGATATAGTGATTGAGGCCATGCTGGAAGCTCCC
TATAAAAAAGAGGAGGATGAGCAGCAAAGGAAAGAGGTTAAAAAGGACAGTCCTAGCAATACCA
CCAGCAACACCGGCAACAGTGGCAGTGGTACCAGTGTGAGCACCACCACTGGGGAGACAAGCAA
GAAGAAGAGGAGTCGGAGTCATAGTAGAAGCAGGGATAGAAAGTGCAGTCGTAGCCGAGACCGG
CATAGACGGAGAAACAGTCGTAGTCGAAGTCGAGATCGGCAGCGTCATCACCGCAGCCGCAGCC
GTAGCTGGGATCGGCGACATAATAGTGAGTCGCGAAGTAGAGACCGGCGACGTGAAGATCGTGT
GCGCTATAGGAGTCCTCCACTTCCCACTGGACGTAGGTATGGACACAGTAAGAGCCCTCATTTC
AAAGAGAAGAGCCCGGTCAGGCAGCCAATTGATAATCTGAGCCCTGAGGAGCGTGATGCCCGCA
CAGTTTTCTGTATGCAATTAGCTGCCCGTATCCGGCCTCGAGACCTGGAGGACTTTTTTTCTGC
TGTTGGCAAGGTTCGTGATGTGCGTATCATCTCAGATCGGAACTCACGTCGTTCTAAAGGCATT
GCGTATGTGGAATTCTGTGAAATGCAGTCTGTGCCACTGGCCATTGGGCTGACTGGGCAACGAC
TTCTGGGAGTACCTATCATTGTACAGGCCTCACAGGCTGAGAAAAACCGATTGGCAGCCATGGC
CAACAATCTGCAGAAGGGTACTGGTGGACCAATGCGCCTCTATGTGGGCTCCCTGCACTTCAAT
ATCACTGAGGACATGCTCCGGGGCATCTTTGAGCCTTTTGGCAAGATTGACAATATTATCCTGA
TGAAAGACTCAGATACAGGCCGTTCTAAAGGTTACGGTTTTATTACGTTCTCTGACTCTGAGTG
TGCCCGGCGGGCCCTGGAACAGTTGAATGGTTTTGAACTTGCTGGTCGACCTATGAGGGTTGGC
CAAGTGACTGAGCGGCTGGATGGTGGCACAGACATCACTTTTCCTGATGGGGACCAGGAGCTGG
ATCTGGGATCAGCAGGTGGACGTTTGCAGCTTGTGGCCAAACTGGCAGAAGGCTCTGGAATCCA
GCTGCCAACCACAGCTGCTGCTGCTGCTGCTGCTGCCCAAGCTGCTGCCTTACAACTGAATGGA
GCAGTTCCTTTGGGGGCCCTGAACCCAGCAGCTCTGACTGCTCTGAGTCCGGCTTTGAACCTTG
CCTCCCAGGCAATTGCATCCCAGTGCTTCCAGCTTTCCAGCCTCTTTACCCCCCAAACCATGTG
A

hide sequence

RefSeq Acc Id:

XM_013364518 ⟹ XP_013219972

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	34,986,505 - 34,999,454 (-)	NCBI
SpeTri2.0	NW_004936722	1,389,534 - 1,402,487 (+)	NCBI

Sequence:

show sequence

TCTTTCCGGCGCATGCGCAGATTGCGGAAGGTTCTGGAAGATAGCTGAGGTGCCGCCATTTTGC
GGGAAGAGGAGCAGGTCTGACTGCTGTGCTGCTTTTTTAGCTGAGACCGTAGGATATAGCTGAG
CTTCGCGCCCCACACACACCTAAAGGAACGGAGAGAACCGGGACCCCCCTGCGGGGACCCGGAA
CTGATCTGACACGATGGCATCTGATGACTTTGATATAGTGATTGAGGCCATGCTGGAAGCTCCC
TATAAAAAAGAGGAGGATGAGCAGCAAAGGAAAGAGGTTAAAAAGGACAGTCCTAGCAATACCA
CCAGCAACACCGGCAACAGTGGCAGTGGTACCAGTGTGAGCACCACCACTGGGGAGACAAGCAA
GAAGAAGAGGAGTCGGAGTCATAGTAGAAGCAGGGATAGAAAGTGCAGTCGTAGCCGAGACCGG
CATAGACGGAGAAACAGTCGTAGTCGAAGTCGAGATCGGCAGCGTCATCACCGCAGCCGCAGCC
GTAGCTGGGATCGGCGACATAATAGTGAGTCGCGAAGTAGAGACCGGCGACGTGAAGATCGTGT
GCGCTATAGGAGTCCTCCACTTCCCACTGGACGTAGGTATGGACACAGTAAGAGCCCTCATTTC
AAAGAGAAGAGCCCGGTCAGGCAGCCAATTGATAATCTGAGCCCTGAGGAGCGTGATGCCCGCA
CAGTTTTCTGTATGCAATTAGCTGCCCGTATCCGGCCTCGAGACCTGGAGGACTTTTTTTCTGC
TGTTGGCAAGGTTCGTGATGTGCGTATCATCTCAGATCGGAACTCACGTCGTTCTAAAGGCATT
GCGTATGTGGAATTCTGTGAAATGCAGTCTGTGCCACTGGCCATTGGGCTGACTGGGCAACGAC
TTCTGGGAGTACCTATCATTGTACAGGCCTCACAGGCTGAGAAAAACCGATTGGCAGCCATGGC
CAACAATCTGCAGAAGGGTACTGGTGGACCAATGCGCCTCTATGTGGGCTCCCTGCACTTCAAT
ATCACTGAGGACATGCTCCGGGGCATCTTTGAGCCTTTTGGCAAGATTGACAATATTATCCTGA
TGAAAGACTCAGATACAGGCCGTTCTAAAGGTTACGGTTTTATTACGTTCTCTGACTCTGAGTG
TGCCCGGCGGGCCCTGGAACAGTTGAATGGTTTTGAACTTGCTGGTCGACCTATGAGGGTTGGC
CAAGTGACTGAGCGGCTGGATGGTGGCACAGACATCACTTTTCCTGATGGGGACCAGGAGCTGG
ATCTGGGATCAGCAGGTGGACGTTTGCAGCTTGTGGCCAAACTGGCAGAAGGCTCTGGAATCCA
GCTGCCAACCACAGCTGCTGCTGCTGCTGCTGCTGCCCAAGCTGCTGCCTTACAACTGAATGGA
GCAGTTCCTTTGGGGGCCCTGAACCCAGCAGCTCTGACTGCTCTGAGTCCGGCTTTGAACCTTG
CCTCCCAGGCAATTGCATCCCAGTGCTTCCAGCTTTCCAGCCTCTTTACCCCCCAAACCATGTA
AATCAGTGGCACAGCACACTACCTCTCTGTACCGTCTGGGTCCTGCCACTCTCTTCTCCTTCTA
CTGCCCTGTCTTCCATTTGTGGACCAAGCCATCCTGAGGCATGGACATTGATTCTGGAGGAACT
TGGGGCCACTCTTAAGACAACAAGAAGAGCTCCTGCCCATGCCCCACTGGGAATGGACTCTGCT
GAGCAAAGCCCCCAGTTGAAGAGAACAATCTACACCTGCATTGAACACTTTTGTCTTTGTGTAT
CTTTTCCCAAGACCACCTTCTTTCCCTTTCCCATTACCTCTTAGTGATTCTTCCTCCATTGGGA
AGGCCATAGGGTATTAACTATAGGACCTAACCTCTCTTCCTATATTTTTACCCTATGAACTATC
ACAGGATCTCTGAATATAGAGGACATTGGAGTTACGGGGTGCACTTTGAAGGTGCTGGACTTTT
GCTTTAAGGACCCTGGCAGATAGCATGGATATGGACATGCACATTATGACACCTGGCTCAGGCC
TCAGCTTAATTATAGCTTGAAGCCAGAACTACTACTGTAGGCTCAGCATCTTATTGGGAGGCAC
AGTAGTGATCTATCCTGCCAGGCAATTGGGATTGAAGCCTCAGGGGCTTTCAGGAGTTTAAGTA
AAAGGTAGGATACCTTTCCATCTTCCTTTGTACACTTGTCCTTCTTCTCAAGTCCTCCCTTTGG
CCTAGGGTGTGAGGATGGAGGGGAGGCTGCTATTTTCCACCACTTCCTATGTGCCTCTACTGAT
GTTTCAACCCTGGTGGTTAAAGCCACTCCCATCCCCTACCTGAGTATGGGTGAGCCCTTCTCAC
TTGATTTTATATCCTTGTGTCTATGTACATATAAAAGAAAAAATTATATATATATACATATAAA
CTTTATATAAAAGCCAATCTCCCTGTTGTGGCTGCTGCTGTCCATGCGGTCTCAGTTAGTGTGT
TGTTCTGATGTTAAACTTCGGAGCCAAAACCATGATGGTTCCAGGGAGATATATAAAACTTTTA
TAATACCA

hide sequence

RefSeq Acc Id:

XM_013364521 ⟹ XP_013219975

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	34,986,505 - 34,993,802 (-)	NCBI
SpeTri2.0	NW_004936722	1,395,792 - 1,402,487 (+)	NCBI

Sequence:

show sequence

CCACCAGCAACACCGGCAACAGTGGCAGTGGTACCAGTGTGAGCACCACCACTGGGGAGACAAG
CAATGTTCACTTTACAGTGTAGATTTGTGGATCAGTCCTAGCATCGATATATTTCATTTGAATA
AAATAGCAAGAGGACCCCTGATTTGGAAACACCAGCTTTTGCTTGGCTTTGGGGGGAAATTGGC
CACTTCAGATGACTGACAGCATTCAGGGCTCTGTGAAGAAGAGGAGTCGGAGTCATAGTAGAAG
CAGGGATAGAAAGTGCAGTCGTAGCCGAGACCGGCATAGACGGAGAAACAGTCGTAGTCGAAGT
CGAGATCGGCAGCGTCATCACCGCAGCCGCAGCCGTAGCTGGGATCGGCGACATAATAGTGAGT
CGCGAAGTAGAGACCGGCGACGTGAAGATCGTGTGCGCTATAGGAGTCCTCCACTTCCCACTGG
ACGTAGGTATGGACACAGTAAGAGCCCTCATTTCAAAGAGAAGAGCCCGGTCAGGCAGCCAATT
GATAATCTGAGCCCTGAGGAGCGTGATGCCCGCACAGTTTTCTGTATGCAATTAGCTGCCCGTA
TCCGGCCTCGAGACCTGGAGGACTTTTTTTCTGCTGTTGGCAAGGTTCGTGATGTGCGTATCAT
CTCAGATCGGAACTCACGTCGTTCTAAAGGCATTGCGTATGTGGAATTCTGTGAAATGCAGTCT
GTGCCACTGGCCATTGGGCTGACTGGGCAACGACTTCTGGGAGTACCTATCATTGTACAGGCCT
CACAGGCTGAGAAAAACCGATTGGCAGCCATGGCCAACAATCTGCAGAAGGGTACTGGTGGACC
AATGCGCCTCTATGTGGGCTCCCTGCACTTCAATATCACTGAGGACATGCTCCGGGGCATCTTT
GAGCCTTTTGGCAAGATTGACAATATTATCCTGATGAAAGACTCAGATACAGGCCGTTCTAAAG
GTTACGGTTTTATTACGTTCTCTGACTCTGAGTGTGCCCGGCGGGCCCTGGAACAGTTGAATGG
TTTTGAACTTGCTGGTCGACCTATGAGGGTTGGCCAAGTGACTGAGCGGCTGGATGGTGGCACA
GACATCACTTTTCCTGATGGGGACCAGGAGCTGGATCTGGGATCAGCAGGTGGACGTTTGCAGC
TTGTGGCCAAACTGGCAGAAGGCTCTGGAATCCAGCTGCCAACCACAGCTGCTGCTGCTGCTGC
TGCTGCCCAAGCTGCTGCCTTACAACTGAATGGAGCAGTTCCTTTGGGGGCCCTGAACCCAGCA
GCTCTGACTGCTCTGAGTCCGGCTTTGAACCTTGCCTCCCAGGCAATTGCATCCCAGTGCTTCC
AGCTTTCCAGCCTCTTTACCCCCCAAACCATGTAAATCAGTGGCACAGCACACTACCTCTCTGT
ACCGTCTGGGTCCTGCCACTCTCTTCTCCTTCTACTGCCCTGTCTTCCATTTGTGGACCAAGCC
ATCCTGAGGCATGGACATTGATTCTGGAGGAACTTGGGGCCACTCTTAAGACAACAAGAAGAGC
TCCTGCCCATGCCCCACTGGGAATGGACTCTGCTGAGCAAAGCCCCCAGTTGAAGAGAACAATC
TACACCTGCATTGAACACTTTTGTCTTTGTGTATCTTTTCCCAAGACCACCTTCTTTCCCTTTC
CCATTACCTCTTAGTGATTCTTCCTCCATTGGGAAGGCCATAGGGTATTAACTATAGGACCTAA
CCTCTCTTCCTATATTTTTACCCTATGAACTATCACAGGATCTCTGAATATAGAGGACATTGGA
GTTACGGGGTGCACTTTGAAGGTGCTGGACTTTTGCTTTAAGGACCCTGGCAGATAGCATGGAT
ATGGACATGCACATTATGACACCTGGCTCAGGCCTCAGCTTAATTATAGCTTGAAGCCAGAACT
ACTACTGTAGGCTCAGCATCTTATTGGGAGGCACAGTAGTGATCTATCCTGCCAGGCAATTGGG
ATTGAAGCCTCAGGGGCTTTCAGGAGTTTAAGTAAAAGGTAGGATACCTTTCCATCTTCCTTTG
TACACTTGTCCTTCTTCTCAAGTCCTCCCTTTGGCCTAGGGTGTGAGGATGGAGGGGAGGCTGC
TATTTTCCACCACTTCCTATGTGCCTCTACTGATGTTTCAACCCTGGTGGTTAAAGCCACTCCC
ATCCCCTACCTGAGTATGGGTGAGCCCTTCTCACTTGATTTTATATCCTTGTGTCTATGTACAT
ATAAAAGAAAAAATTATATATATATACATATAAACTTTATATAAAAGCCAATCTCCCTGTTGTG
GCTGCTGCTGTCCATGCGGTCTCAGTTAGTGTGTTGTTCTGATGTTAAACTTCGGAGCCAAAAC
CATGATGGTTCCAGGGAGATATATAAAACTTTTATAATACCA

hide sequence

RefSeq Acc Id:

XM_013364522 ⟹ XP_013219976

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	34,986,505 - 34,999,454 (-)	NCBI
SpeTri2.0	NW_004936722	1,389,534 - 1,402,487 (+)	NCBI

Sequence:

show sequence

TCTTTCCGGCGCATGCGCAGATTGCGGAAGGTTCTGGAAGATAGCTGAGGTGCCGCCATTTTGC
GGGAAGAGGAGCAGGTCTGACTGCTGTGCTGCTTTTTTAGCTGAGACCGTAGGATATAGCTGAG
CTTCGCGCCCCACACACACCTAAAGGAACGGAGAGAACCGGGACCCCCCTGCGGGGACCCGGAA
CTGATCTGACACGATGGCATCTGATGACTTTGATATAGTGATTGAGGCCATGCTGGAAGCTCCC
TATAAAAAAGAGGAGGATGAGCAGCAAAGGAAAGAGGTTAAAAAGGACAGTCCTAGCAATACCA
CCAGCAACACCGGCAACAGTGGCAGTGGTACCAGTGTGAGCACCACCACTGGGGAGACAAGCAA
GAAGAAGAGGAGTCGGAGTCATAGTAGAAGCAGGGATAGAAAGTGCAGACGTAGGTATGGACAC
AGTAAGAGCCCTCATTTCAAAGAGAAGAGCCCGGTCAGGCAGCCAATTGATAATCTGAGCCCTG
AGGAGCGTGATGCCCGCACAGTTTTCTGTATGCAATTAGCTGCCCGTATCCGGCCTCGAGACCT
GGAGGACTTTTTTTCTGCTGTTGGCAAGGTTCGTGATGTGCGTATCATCTCAGATCGGAACTCA
CGTCGTTCTAAAGGCATTGCGTATGTGGAATTCTGTGAAATGCAGTCTGTGCCACTGGCCATTG
GGCTGACTGGGCAACGACTTCTGGGAGTACCTATCATTGTACAGGCCTCACAGGCTGAGAAAAA
CCGATTGGCAGCCATGGCCAACAATCTGCAGAAGGGTACTGGTGGACCAATGCGCCTCTATGTG
GGCTCCCTGCACTTCAATATCACTGAGGACATGCTCCGGGGCATCTTTGAGCCTTTTGGCAAGA
TTGACAATATTATCCTGATGAAAGACTCAGATACAGGCCGTTCTAAAGGTTACGGTTTTATTAC
GTTCTCTGACTCTGAGTGTGCCCGGCGGGCCCTGGAACAGTTGAATGGTTTTGAACTTGCTGGT
CGACCTATGAGGGTTGGCCAAGTGACTGAGCGGCTGGATGGTGGCACAGACATCACTTTTCCTG
ATGGGGACCAGGAGCTGGATCTGGGATCAGCAGGTGGACGTTTGCAGCTTGTGGCCAAACTGGC
AGAAGGCTCTGGAATCCAGCTGCCAACCACAGCTGCTGCTGCTGCTGCTGCTGCCCAAGCTGCT
GCCTTACAACTGAATGGAGCAGTTCCTTTGGGGGCCCTGAACCCAGCAGCTCTGACTGCTCTGA
GTCCGGCTTTGAACCTTGCCTCCCAGGCAATTGCATCCCAGTGCTTCCAGCTTTCCAGCCTCTT
TACCCCCCAAACCATGTAAATCAGTGGCACAGCACACTACCTCTCTGTACCGTCTGGGTCCTGC
CACTCTCTTCTCCTTCTACTGCCCTGTCTTCCATTTGTGGACCAAGCCATCCTGAGGCATGGAC
ATTGATTCTGGAGGAACTTGGGGCCACTCTTAAGACAACAAGAAGAGCTCCTGCCCATGCCCCA
CTGGGAATGGACTCTGCTGAGCAAAGCCCCCAGTTGAAGAGAACAATCTACACCTGCATTGAAC
ACTTTTGTCTTTGTGTATCTTTTCCCAAGACCACCTTCTTTCCCTTTCCCATTACCTCTTAGTG
ATTCTTCCTCCATTGGGAAGGCCATAGGGTATTAACTATAGGACCTAACCTCTCTTCCTATATT
TTTACCCTATGAACTATCACAGGATCTCTGAATATAGAGGACATTGGAGTTACGGGGTGCACTT
TGAAGGTGCTGGACTTTTGCTTTAAGGACCCTGGCAGATAGCATGGATATGGACATGCACATTA
TGACACCTGGCTCAGGCCTCAGCTTAATTATAGCTTGAAGCCAGAACTACTACTGTAGGCTCAG
CATCTTATTGGGAGGCACAGTAGTGATCTATCCTGCCAGGCAATTGGGATTGAAGCCTCAGGGG
CTTTCAGGAGTTTAAGTAAAAGGTAGGATACCTTTCCATCTTCCTTTGTACACTTGTCCTTCTT
CTCAAGTCCTCCCTTTGGCCTAGGGTGTGAGGATGGAGGGGAGGCTGCTATTTTCCACCACTTC
CTATGTGCCTCTACTGATGTTTCAACCCTGGTGGTTAAAGCCACTCCCATCCCCTACCTGAGTA
TGGGTGAGCCCTTCTCACTTGATTTTATATCCTTGTGTCTATGTACATATAAAAGAAAAAATTA
TATATATATACATATAAACTTTATATAAAAGCCAATCTCCCTGTTGTGGCTGCTGCTGTCCATG
CGGTCTCAGTTAGTGTGTTGTTCTGATGTTAAACTTCGGAGCCAAAACCATGATGGTTCCAGGG
AGATATATAAAACTTTTATAATACCA

hide sequence

RefSeq Acc Id:

XM_021735594 ⟹ XP_021591269

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	34,986,505 - 34,993,802 (-)	NCBI
SpeTri2.0	NW_004936722	1,395,801 - 1,402,487 (+)	NCBI

Sequence:

show sequence

ACACCGGCAACAGTGGCAGTGGTACCAGTGTGAGCACCACCACTGGGGAGACAAGCAATGTAGA
TTTGTGGATCAGTCCTAGCATCGATATATTTCATTTGAATAAAATAGCAAGAGGACCCCTGATT
TGGAAACACCAGCTTTTGCTTGGCTTTGGGGGGAAATTGGCCACTTCAGATGACTGACAGCATT
CAGGGCTCTGTGAAGAAGAGGAGTCGGAGTCATAGTAGAAGCAGGGATAGAAAGTGCAGTCGTA
GCCGAGACCGGCATAGACGGAGAAACAGTCGTAGTCGAAGTCGAGATCGGCAGCGTCATCACCG
CAGCCGCAGCCGTAGCTGGGATCGGCGACATAATAGTGAGTCGCGAAGTAGAGACCGGCGACGT
GAAGATCGTGTGCGCTATAGGAGTCCTCCACTTCCCACTGGACGTAGGTATGGACACAGTAAGA
GCCCTCATTTCAAAGAGAAGAGCCCGGTCAGGCAGCCAATTGATAATCTGAGCCCTGAGGAGCG
TGATGCCCGCACAGTTTTCTGTATGCAATTAGCTGCCCGTATCCGGCCTCGAGACCTGGAGGAC
TTTTTTTCTGCTGTTGGCAAGGTTCGTGATGTGCGTATCATCTCAGATCGGAACTCACGTCGTT
CTAAAGGCATTGCGTATGTGGAATTCTGTGAAATGCAGTCTGTGCCACTGGCCATTGGGCTGAC
TGGGCAACGACTTCTGGGAGTACCTATCATTGTACAGGCCTCACAGGCTGAGAAAAACCGATTG
GCAGCCATGGCCAACAATCTGCAGAAGGGTACTGGTGGACCAATGCGCCTCTATGTGGGCTCCC
TGCACTTCAATATCACTGAGGACATGCTCCGGGGCATCTTTGAGCCTTTTGGCAAGATTGACAA
TATTATCCTGATGAAAGACTCAGATACAGGCCGTTCTAAAGGTTACGGTTTTATTACGTTCTCT
GACTCTGAGTGTGCCCGGCGGGCCCTGGAACAGTTGAATGGTTTTGAACTTGCTGGTCGACCTA
TGAGGGTTGGCCAAGTGACTGAGCGGCTGGATGGTGGCACAGACATCACTTTTCCTGATGGGGA
CCAGGAGCTGGATCTGGGATCAGCAGGTGGACGTTTGCAGCTTGTGGCCAAACTGGCAGAAGGC
TCTGGAATCCAGCTGCCAACCACAGCTGCTGCTGCTGCTGCTGCTGCCCAAGCTGCTGCCTTAC
AACTGAATGGAGCAGTTCCTTTGGGGGCCCTGAACCCAGCAGCTCTGACTGCTCTGAGTCCGGC
TTTGAACCTTGCCTCCCAGGCAATTGCATCCCAGTGCTTCCAGCTTTCCAGCCTCTTTACCCCC
CAAACCATGTAAATCAGTGGCACAGCACACTACCTCTCTGTACCGTCTGGGTCCTGCCACTCTC
TTCTCCTTCTACTGCCCTGTCTTCCATTTGTGGACCAAGCCATCCTGAGGCATGGACATTGATT
CTGGAGGAACTTGGGGCCACTCTTAAGACAACAAGAAGAGCTCCTGCCCATGCCCCACTGGGAA
TGGACTCTGCTGAGCAAAGCCCCCAGTTGAAGAGAACAATCTACACCTGCATTGAACACTTTTG
TCTTTGTGTATCTTTTCCCAAGACCACCTTCTTTCCCTTTCCCATTACCTCTTAGTGATTCTTC
CTCCATTGGGAAGGCCATAGGGTATTAACTATAGGACCTAACCTCTCTTCCTATATTTTTACCC
TATGAACTATCACAGGATCTCTGAATATAGAGGACATTGGAGTTACGGGGTGCACTTTGAAGGT
GCTGGACTTTTGCTTTAAGGACCCTGGCAGATAGCATGGATATGGACATGCACATTATGACACC
TGGCTCAGGCCTCAGCTTAATTATAGCTTGAAGCCAGAACTACTACTGTAGGCTCAGCATCTTA
TTGGGAGGCACAGTAGTGATCTATCCTGCCAGGCAATTGGGATTGAAGCCTCAGGGGCTTTCAG
GAGTTTAAGTAAAAGGTAGGATACCTTTCCATCTTCCTTTGTACACTTGTCCTTCTTCTCAAGT
CCTCCCTTTGGCCTAGGGTGTGAGGATGGAGGGGAGGCTGCTATTTTCCACCACTTCCTATGTG
CCTCTACTGATGTTTCAACCCTGGTGGTTAAAGCCACTCCCATCCCCTACCTGAGTATGGGTGA
GCCCTTCTCACTTGATTTTATATCCTTGTGTCTATGTACATATAAAAGAAAAAATTATATATAT
ATACATATAAACTTTATATAAAAGCCAATCTCCCTGTTGTGGCTGCTGCTGTCCATGCGGTCTC
AGTTAGTGTGTTGTTCTGATGTTAAACTTCGGAGCCAAAACCATGATGGTTCCAGGGAGATATA
TAAAACTTTTATAATACCA

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Protein Sequences


Protein RefSeqs	XP_005338842	(Get FASTA)	NCBI Sequence Viewer
	XP_013219972	(Get FASTA)	NCBI Sequence Viewer
	XP_013219975	(Get FASTA)	NCBI Sequence Viewer
	XP_013219976	(Get FASTA)	NCBI Sequence Viewer
	XP_021591269	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009304.3
GenBank Protein	KAG3260879	(Get FASTA)	NCBI Sequence Viewer
	KAG3260880	(Get FASTA)	NCBI Sequence Viewer
	KAG3260881	(Get FASTA)	NCBI Sequence Viewer
	KAG3260882	(Get FASTA)	NCBI Sequence Viewer
	KAG3260883	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013219972 ⟸ XM_013364518

- Peptide Label:

isoform X1

- Sequence:

show sequence

MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDSPSNTTSNTGNSGSGTSVSTTTGETSKKKRS
RSHSRSRDRKCSRSRDRHRRRNSRSRSRDRQRHHRSRSRSWDRRHNSESRSRDRRREDRVRYRS
PPLPTGRRYGHSKSPHFKEKSPVRQPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKV
RDVRIISDRNSRRSKGIAYVEFCEMQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQ
KGTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIILMKDSDTGRSKGYGFITFSDSECARRA
LEQLNGFELAGRPMRVGQVTERLDGGTDITFPDGDQELDLGSAGGRLQLVAKLAEGSGIQLPTT
AAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQAIASQCFQLSSLFTPQTM

hide sequence

RefSeq Acc Id:

XP_005338842 ⟸ XM_005338785

- Peptide Label:

isoform X2

- Sequence:

show sequence

MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDSPSNTTSNTGNSGSGTSVSTTTGETSKKKRS
RSHSRSRDRKCSRSRDRHRRRNSRSRSRDRQRHHRSRSRSWDRRHNSESRSRDRRREDRVRYRS
PPLPTGRRYGHSKSPHFKEKSPVRQPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKV
RDVRIISDRNSRRSKGIAYVEFCEMQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQ
KGTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIILMKDSDTGRSKGYGFITFSDSECARRA
LEQLNGFELAGRPMRVGQVTERLDGGTDITFPDGDQELDLGSAGGRLQLVAKLAEGSGIQLPTT
AAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQAIASQCFQLSSLFTPQTM

hide sequence

RefSeq Acc Id:

XP_013219976 ⟸ XM_013364522

- Peptide Label:

isoform X4

- Sequence:

show sequence

MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDSPSNTTSNTGNSGSGTSVSTTTGETSKKKRS
RSHSRSRDRKCRRRYGHSKSPHFKEKSPVRQPIDNLSPEERDARTVFCMQLAARIRPRDLEDFF
SAVGKVRDVRIISDRNSRRSKGIAYVEFCEMQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA
MANNLQKGTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIILMKDSDTGRSKGYGFITFSDS
ECARRALEQLNGFELAGRPMRVGQVTERLDGGTDITFPDGDQELDLGSAGGRLQLVAKLAEGSG
IQLPTTAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQAIASQCFQLSSLFTPQT
M

hide sequence

RefSeq Acc Id:

XP_013219975 ⟸ XM_013364521

- Peptide Label:

isoform X3

- Sequence:

show sequence

MTDSIQGSVKKRSRSHSRSRDRKCSRSRDRHRRRNSRSRSRDRQRHHRSRSRSWDRRHNSESRS
RDRRREDRVRYRSPPLPTGRRYGHSKSPHFKEKSPVRQPIDNLSPEERDARTVFCMQLAARIRP
RDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEMQSVPLAIGLTGQRLLGVPIIVQASQA
EKNRLAAMANNLQKGTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIILMKDSDTGRSKGYG
FITFSDSECARRALEQLNGFELAGRPMRVGQVTERLDGGTDITFPDGDQELDLGSAGGRLQLVA
KLAEGSGIQLPTTAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQAIASQCFQLS
SLFTPQTM

hide sequence

RefSeq Acc Id:

XP_021591269 ⟸ XM_021735594

- Peptide Label:

isoform X3

- Sequence:

show sequence

MTDSIQGSVKKRSRSHSRSRDRKCSRSRDRHRRRNSRSRSRDRQRHHRSRSRSWDRRHNSESRS
RDRRREDRVRYRSPPLPTGRRYGHSKSPHFKEKSPVRQPIDNLSPEERDARTVFCMQLAARIRP
RDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEMQSVPLAIGLTGQRLLGVPIIVQASQA
EKNRLAAMANNLQKGTGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIILMKDSDTGRSKGYG
FITFSDSECARRALEQLNGFELAGRPMRVGQVTERLDGGTDITFPDGDQELDLGSAGGRLQLVA
KLAEGSGIQLPTTAAAAAAAAQAAALQLNGAVPLGALNPAALTALSPALNLASQAIASQCFQLS
SLFTPQTM

hide sequence

RefSeq Acc Id:

ENSSTOP00000009304 ⟸ ENSSTOT00000010367

Protein Domains

RRM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010354	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010367.3	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RBM39_linker	UniProtKB/TrEMBL
	RBM39_SF	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
NCBI Gene	Rbm23	ENTREZGENE
PANTHER	RNA-BINDING PROTEIN 23-RELATED	UniProtKB/TrEMBL
	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED	UniProtKB/TrEMBL
Pfam	RBM39linker	UniProtKB/TrEMBL
	RRM_1	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	I3MFC8_ICTTR	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar