Coro7 (coronin 7) - Rat Genome Database

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Gene: Coro7 (coronin 7) Ictidomys tridecemlineatus
Analyze
Symbol: Coro7
Name: coronin 7 (Ensembl:coronin-7)
RGD ID: 12640142
Description: ENCODES a protein that exhibits actin binding (inferred); actin filament binding (inferred); INVOLVED IN actin filament organization (ortholog); cell migration (ortholog); establishment of cell polarity (ortholog); ASSOCIATED WITH acute megakaryocytic leukemia (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coronin-7; coronin-7, transcript variant X1; coronin-7, transcript variant X2; coronin-7, transcript variant X3; LOC101973190
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344106,557,388 - 106,613,370 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493669496,110 - 152,133 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493669496,107 - 152,075 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Coro7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344106,557,388 - 106,613,370 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493669496,110 - 152,133 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493669496,107 - 152,075 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CORO7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38164,354,542 - 4,416,596 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl164,354,542 - 4,425,705 (-)EnsemblGRCh38hg38GRCh38
GRCh37164,404,543 - 4,466,597 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36164,344,546 - 4,406,572 (-)NCBINCBI36Build 36hg18NCBI36
Build 34164,344,545 - 4,406,572NCBI
Celera164,613,451 - 4,675,545 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef164,371,719 - 4,434,225 (-)NCBIHuRef
CHM1_1164,404,317 - 4,466,705 (-)NCBICHM1_1
T2T-CHM13v2.0164,383,717 - 4,445,792 (-)NCBIT2T-CHM13v2.0
Coro7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,444,748 - 4,497,584 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,443,997 - 4,497,641 (-)EnsemblGRCm39 Ensembl
GRCm38164,626,884 - 4,679,720 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,626,133 - 4,679,777 (-)EnsemblGRCm38mm10GRCm38
MGSCv37164,626,884 - 4,679,720 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36164,541,385 - 4,594,953 (-)NCBIMGSCv36mm8
Celera165,256,351 - 5,310,394 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.45NCBI
Coro7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,386,683 - 11,447,422 (+)NCBIGRCr8
mRatBN7.21010,880,299 - 10,941,001 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1010,885,196 - 10,941,001 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1015,593,979 - 15,649,691 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01015,082,799 - 15,138,509 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01010,751,723 - 10,807,664 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01011,090,200 - 11,144,289 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1011,090,314 - 11,143,881 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1011,373,346 - 11,386,059 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0109,855,558 - 9,909,647 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41011,014,535 - 11,070,332 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11011,064,141 - 11,070,331 (+)NCBI
Celera109,847,444 - 9,903,260 (+)NCBICelera
Cytogenetic Map10q12NCBI
Coro7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544213,009,977 - 13,084,355 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544213,010,032 - 13,084,897 (+)NCBIChiLan1.0ChiLan1.0
CORO7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2184,886,183 - 4,956,461 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1168,675,872 - 8,746,135 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0163,281,481 - 3,342,937 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1164,448,849 - 4,515,036 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl164,418,006 - 4,515,038 (-)Ensemblpanpan1.1panPan2
LOC102152446
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1636,980,302 - 37,038,210 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha638,308,608 - 38,367,127 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0637,184,561 - 37,243,147 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl637,184,569 - 37,252,759 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1636,978,828 - 37,037,380 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0636,872,005 - 36,930,546 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0637,273,280 - 37,331,846 (+)NCBIUU_Cfam_GSD_1.0
LOC103227636
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.154,034,282 - 4,098,554 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl54,020,116 - 4,098,328 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606826,591,274 - 26,657,278 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000000454   ⟹   ENSSTOP00000000408
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493669496,110 - 152,133 (+)Ensembl
RefSeq Acc Id: XM_005337733   ⟹   XP_005337790
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344106,557,388 - 106,613,370 (-)NCBI
SpeTri2.0NW_00493669496,107 - 152,075 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040277867   ⟹   XP_040133801
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344106,557,388 - 106,613,078 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005337790 (Get FASTA)   NCBI Sequence Viewer  
  XP_040133801 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000408.3
GenBank Protein KAG3259128 (Get FASTA)   NCBI Sequence Viewer  
  KAG3259129 (Get FASTA)   NCBI Sequence Viewer  
  KAG3259130 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005337790   ⟸   XM_005337733
- Peptide Label: isoform X2
- UniProtKB: I3LWN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040133801   ⟸   XM_040277867
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000000408   ⟸   ENSSTOT00000000454
Protein Domains
DUF1899


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000452 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000454.3 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Coronin UniProtKB/TrEMBL
  DUF1899 UniProtKB/TrEMBL
  Quinoprotein_ADH-like_supfam UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
NCBI Gene LOC101973190 ENTREZGENE
PANTHER PTHR10856 UniProtKB/TrEMBL
  PTHR10856:SF20 UniProtKB/TrEMBL
Pfam DUF1899 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
  WD40_4 UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART DUF1899 UniProtKB/TrEMBL
  DUF1900 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50998 UniProtKB/TrEMBL
UniProt I3LWN6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 Coro7  coronin 7  LOC101973190  coronin-7  Symbol and/or name change 5135510 APPROVED