Ltf (lactotransferrin) - Rat Genome Database

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Gene: Ltf (lactotransferrin) Ictidomys tridecemlineatus
Analyze
Symbol: Ltf
Name: lactotransferrin
RGD ID: 12639875
Description: ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (ortholog); heparin binding (ortholog); iron ion binding (ortholog); INVOLVED IN antibacterial humoral response (ortholog); antifungal humoral response (ortholog); antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); ASSOCIATED WITH Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis (ortholog); candidiasis (ortholog); Carbon Tetrachloride Poisoning (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118200,795,136 - 200,824,718 (-)NCBI
SpeTri2.0NW_004936596344,287 - 373,788 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
Ltf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118200,795,136 - 200,824,718 (-)NCBI
SpeTri2.0NW_004936596344,287 - 373,788 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LTF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl346,435,645 - 46,485,234 (-)EnsemblGRCh38hg38GRCh38
GRCh38346,435,645 - 46,485,234 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37346,477,136 - 46,526,724 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36346,452,500 - 46,481,399 (-)NCBINCBI36hg18NCBI36
Build 34346,452,500 - 46,481,399NCBI
Celera346,414,868 - 46,443,775 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef346,519,882 - 46,548,964 (-)NCBIHuRef
CHM1_1346,427,517 - 46,456,606 (-)NCBICHM1_1
Ltf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399110,848,360 - 110,871,834 (+)NCBIGRCm39mm39
GRCm39 Ensembl9110,848,339 - 110,871,835 (+)Ensembl
GRCm389111,019,292 - 111,042,766 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9111,019,271 - 111,042,767 (+)EnsemblGRCm38mm10GRCm38
MGSCv379110,921,796 - 110,945,270 (+)NCBIGRCm37mm9NCBIm37
MGSCv369110,864,108 - 110,887,582 (+)NCBImm8
Celera9110,742,738 - 110,766,162 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map960.79NCBI
Ltf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28110,999,948 - 111,022,795 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl8110,999,948 - 111,022,795 (+)Ensembl
Rnor_6.08119,290,416 - 119,313,261 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8119,290,416 - 119,313,261 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08118,632,730 - 118,655,575 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48115,417,764 - 115,440,609 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18115,437,256 - 115,458,062 (+)NCBI
Celera8110,282,264 - 110,305,105 (+)NCBICelera
Cytogenetic Map8q32NCBI
Ltf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542025,580,359 - 25,604,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542025,580,449 - 25,604,277 (+)NCBIChiLan1.0ChiLan1.0
LTF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1347,442,440 - 47,471,532 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl347,442,440 - 47,471,532 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0346,337,738 - 46,367,476 (-)NCBIMhudiblu_PPA_v0panPan3
LTF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12042,231,994 - 42,263,202 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2042,231,994 - 42,263,202 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2042,147,994 - 42,179,342 (+)NCBI
ROS_Cfam_1.02042,714,382 - 42,745,648 (+)NCBI
UMICH_Zoey_3.12041,955,622 - 41,986,941 (+)NCBI
UNSW_CanFamBas_1.02042,357,046 - 42,388,364 (+)NCBI
UU_Cfam_GSD_1.02042,637,942 - 42,669,274 (+)NCBI
LTF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1329,413,886 - 29,445,737 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11329,413,886 - 29,445,751 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21332,577,743 - 32,609,425 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LTF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1227,867,332 - 7,896,403 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl227,867,286 - 7,894,521 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041159,254,403 - 159,283,476 (+)NCBIVero_WHO_p1.0
Ltf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473074,636,554 - 74,656,817 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005332916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005332916   ⟹   XP_005332973
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118200,795,136 - 200,824,718 (-)NCBI
SpeTri2.0NW_004936596344,287 - 373,788 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005332973 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3279779 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005332973   ⟸   XM_005332916
- UniProtKB: I3MCM8 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008950 ENTREZGENE
Ensembl Protein ENSSTOP00000008025 ENTREZGENE
NCBI Gene Ltf ENTREZGENE
UniProt I3MCM8 ENTREZGENE