LOC101967819 (cytochrome c oxidase assembly factor 5)

Gene: LOC101967819 (cytochrome c oxidase assembly factor 5) Ictidomys tridecemlineatus

Analyze

Symbol:

LOC101967819 (Ensembl: COA5)

Name:

cytochrome c oxidase assembly factor 5

RGD ID:

12639098

Description:

INVOLVED IN mitochondrial cytochrome c oxidase assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); mitochondrial complex IV deficiency nuclear type 2 (ortholog); mitochondrial complex IV deficiency nuclear type 9 (ortholog); FOUND IN mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	84,441,805 - 84,448,973 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936744	1,695,865 - 1,701,872 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936744	1,695,656 - 1,701,897 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

mitochondrial complex IV deficiency nuclear type 2 (ISO)

mitochondrial complex IV deficiency nuclear type 9 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial cytochrome c oxidase assembly (IEA)

Cellular Component

mitochondrion (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

LOC101967819
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	84,441,805 - 84,448,973 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936744	1,695,865 - 1,701,872 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936744	1,695,656 - 1,701,897 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COA5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	98,599,314 - 98,608,512 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	98,599,314 - 98,608,515 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	99,215,777 - 99,224,975 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	98,582,297 - 98,591,387 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	93,419,589 - 93,428,679 (-)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	92,980,374 - 92,989,569 (-)	NCBI		HuRef
CHM1_1	2	99,220,105 - 99,229,304 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	99,057,641 - 99,066,839 (-)	NCBI		T2T-CHM13v2.0

Coa5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	37,456,166 - 37,469,184 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	37,456,165 - 37,469,184 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	37,417,085 - 37,430,103 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	37,417,084 - 37,430,103 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	37,473,930 - 37,486,948 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	37,361,639 - 37,363,597 (-)	NCBI		MGSCv36	mm8
Celera	1	37,199,083 - 37,212,163 (-)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	15.46	NCBI

Coa5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	47,147,267 - 47,160,724 (-)	NCBI		GRCr8
mRatBN7.2	9	39,651,459 - 39,664,870 (-)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	9	48,147,528 - 48,160,934 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	53,270,276 - 53,283,684 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	51,552,147 - 51,565,553 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	44,011,471 - 44,024,876 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	44,011,471 - 44,024,876 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	43,712,831 - 43,726,105 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	36,365,008 - 36,375,515 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	37,405,756 - 37,419,125 (-)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

LOC102006450
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	5,042,072 - 5,051,007 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955470	5,042,072 - 5,051,007 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100967703
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	29,836,144 - 29,845,174 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	29,838,906 - 29,847,936 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	100,703,400 - 100,712,514 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	99,507,711 - 99,516,814 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	99,507,711 - 99,516,814 (-)	Ensembl	panpan1.1		panPan2

COA5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	44,073,218 - 44,080,346 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	43,931,673 - 44,080,347 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	43,995,454 - 44,002,613 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	44,946,007 - 44,953,169 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	44,803,793 - 44,954,046 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	44,656,390 - 44,663,548 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	44,947,356 - 44,954,518 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	45,123,082 - 45,130,241 (+)	NCBI		UU_Cfam_GSD_1.0

LOC100524554
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	55,677,073 - 55,699,542 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	55,677,042 - 55,687,828 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	58,229,505 - 58,239,555 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COA5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	2,312,808 - 2,322,096 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	2,314,146 - 2,321,988 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	169,833,402 - 169,842,721 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LOC101718187
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	3,634,826 - 3,646,307 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624749	3,634,464 - 3,646,378 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005339606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010001352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000023896 ⟹ ENSSTOP00000022149

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936744	1,695,865 - 1,701,872 (-)	Ensembl

RefSeq Acc Id:

XM_005339606 ⟹ XP_005339663

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	84,441,805 - 84,448,973 (-)	NCBI
SpeTri2.0	NW_004936744	1,695,656 - 1,701,897 (-)	NCBI

Sequence:

show sequence

GAAGTTGTTGTAGTATCTTCCGGTGCCTTCCGCTTGGGGTGTCGCTCGCACCTAGCCAGGTGGT
AGGGGTTGAGTACCGAGAGGGTCGCGCCGCTGCGCGCGGGAGGCGCCGTCATGCCCCGCTATTA
CGAGGACAAGCCGGAGGGCGGCGCGTGCACGGGCGTGAAGGAGGACCTGGGCGCCTGTCTGCTG
CAGTCGGACTGTGTGCTCCAGGAAGGAAAATCTCCTCGGCAGTGTTTGAAGGAAGGATACTGCA
AAGCTTTGAAGTATTCATTTTTTGAGTGTAAAAGATCAATGCTGGATGCCAGATCAAGATTCAG
AGGAAGAAAAGGATATTGATACCATTACATTGAAAGCAAGATGAAAACACCAAAGGATTTTTCC
ACAGAAAAGCCACAATAGGAAATAATTTTTGCTACATCTGTTTGGTTGAACCAGTTTTCCCTCC
ATGGAACGCTGGAGAAATTGGATGAATTTTGGTTTTGAATATGTATAAAGCAAATGCTTCTCTG
AATCTAAGTTATTTTTAGAAGATAAGTTTAATTGAACACTTATAGGCCTGGAATATAATGTGTT
TTGAGATTTTTCCTAAAGTACAGGAAATGGAAAAACTGTTATTTTCAAACCTGACTCTTTAATC
ATATTATACCATTTATACATCTGGAAGGGACCAATGTGACACTGGAGGCTGTCCACAAGATGTT
TATTGAGAAAGTTTATTTAATCTATTCTATTTAGTTCTAGAATAAATTGGTTCCTTGGAGAAGA
AATGCTTTATTTGCATTGATTCACTGAGGCTGAAGTAAAACCTCAGAACTTTGAAATCTGCCAT
AGGGCCTAGCTGGATCCCAAGCCCCACACCGTATTGCCAAGGACTCTTCTATCTCTGACTGATT
TTCCCTTTCCTGGTTTCATTTTTAGGGTGACCCTCTCCACATACAGGACCAGTATCAGTTATAA
GCTCACATCCTTAAGATCTGTTATTCAAAAAGGAGAAAGTGAATTTCCCTTTCCAAGGTCCACA
AATCAAATCCTACTGAAGAACTTTGGTCTTCACTGGGTCACCCGCACTGTGACTGACCACTCCC
AGCAGAATCCCAGTGGTGGAATGGCAGGCCTCTTCCTTGAAGGAAAGGGGGATTTTGAGTACAC
GGAAACAACCAGCGTGTACTGTAGACAGCAGATACAGAAAACATGAAGTGCAAGTTTCAGATTA
TGGTAATTTTATCAGGATCACTTAATACAGAAGAGAGACAAAACCTTTAAATAAAACTTTAGGT
TCACCTAAAGTTGTGAGAATTCCCTAAAATGCCACTGAAGTCTGCTGTGTATGCTGCTTTTCAC
TGGGGAAGGGAAGGTGGTGGATTTCTTCAGCGACTCCTTATACCTGTTTAAGTGCTACAACTTT
CTTGGTTATTGCAGTGCTGGGCTGGGCCTCAAGGCCTTGCACTGAGCTACTCACCCCCCACAGT
GCTACAACTTCTATTAAATGTAATTCTGATAAACTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005339663	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000022149.1
GenBank Protein	KAG3268092	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005339663 ⟸ XM_005339606
- UniProtKB:	I3NCQ2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRYYEDKPEGGACTGVKEDLGACLLQSDCVLQEGKSPRQCLKEGYCKALKYSFFECKRSMLDA RSRFRGRKGY hide sequence

RefSeq Acc Id:

ENSSTOP00000022149 ⟸ ENSSTOT00000023896

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000021056	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000023896.2	UniProtKB/TrEMBL
InterPro	Cyt_c_oxidase_assmbl_Pet191	UniProtKB/TrEMBL
NCBI Gene	LOC101967819	ENTREZGENE
PANTHER	CYTOCHROME C OXIDASE ASSEMBLY FACTOR 5	UniProtKB/TrEMBL
	PTHR28627	UniProtKB/TrEMBL
Pfam	Pet191_N	UniProtKB/TrEMBL
PROSITE	CHCH	UniProtKB/TrEMBL
UniProt	I3NCQ2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM