Paf1 (PAF1 homolog, Paf1/RNA polymerase II complex component) - Rat Genome Database

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Gene: Paf1 (PAF1 homolog, Paf1/RNA polymerase II complex component) Ictidomys tridecemlineatus
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Symbol: Paf1
Name: PAF1 homolog, Paf1/RNA polymerase II complex component
RGD ID: 12638761
Description: ENCODES a protein that exhibits chromatin binding (ortholog); RNA polymerase II complex binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); endodermal cell fate commitment (ortholog); histone H2B ubiquitination (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; FOUND IN Cdc73/Paf1 complex (ortholog); cell junction (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Paf1, RNA polymerase II associated factor, homolog; RNA polymerase II-associated factor 1 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,808,252 - 13,812,872 (-)NCBI
SpeTri2.0NW_0049366612,236,121 - 2,241,086 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Paf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,808,252 - 13,812,872 (-)NCBI
SpeTri2.0NW_0049366612,236,121 - 2,241,086 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1939,385,629 - 39,391,154 (-)EnsemblGRCh38hg38GRCh38
GRCh381939,385,629 - 39,391,106 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371939,876,269 - 39,881,746 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361944,568,109 - 44,573,519 (-)NCBINCBI36hg18NCBI36
Celera1936,677,951 - 36,683,361 (-)NCBI
Cytogenetic Map19q13.2NCBI
HuRef1936,322,971 - 36,328,537 (-)NCBIHuRef
CHM1_11939,877,001 - 39,882,567 (-)NCBICHM1_1
Paf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,074,998 - 28,098,813 (+)NCBIGRCm39mm39
GRCm39 Ensembl728,092,376 - 28,098,813 (+)Ensembl
GRCm38728,392,996 - 28,399,383 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,392,951 - 28,399,388 (+)EnsemblGRCm38mm10GRCm38
MGSCv37729,178,015 - 29,184,402 (+)NCBIGRCm37mm9NCBIm37
MGSCv36728,101,756 - 28,108,143 (+)NCBImm8
Celera722,954,577 - 22,960,972 (+)NCBICelera
Cytogenetic Map7A3NCBI
Paf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2183,683,654 - 83,689,233 (+)NCBI
Rnor_6.0 Ensembl185,362,268 - 85,368,031 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0185,362,421 - 85,367,999 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0186,577,751 - 86,583,329 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,501,213 - 83,506,791 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1183,579,323 - 83,584,901 (+)NCBI
Celera178,079,922 - 78,085,501 (+)NCBICelera
Cytogenetic Map1q21NCBI
Paf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955468166,477 - 172,200 (+)NCBIChiLan1.0ChiLan1.0
PAF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11945,031,819 - 45,037,169 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1945,031,819 - 45,037,169 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01936,484,099 - 36,489,364 (-)NCBIMhudiblu_PPA_v0panPan3
PAF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,828,219 - 113,832,747 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,828,007 - 113,832,735 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1113,231,301 - 113,236,124 (+)NCBI
ROS_Cfam_1.01114,428,562 - 114,433,392 (+)NCBI
UMICH_Zoey_3.11113,987,276 - 113,992,103 (+)NCBI
UNSW_CanFamBas_1.01113,620,056 - 113,624,882 (+)NCBI
UU_Cfam_GSD_1.01114,615,153 - 114,619,983 (+)NCBI
PAF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,046,691 - 48,059,035 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,046,487 - 48,053,631 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214143,692,096 - 143,697,337 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1633,990,552 - 33,996,673 (-)NCBI
ChlSab1.1 Ensembl633,986,916 - 33,996,347 (-)Ensembl
Paf1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479412,719,819 - 12,725,109 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005336410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005336410   ⟹   XP_005336467
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934913,808,252 - 13,812,872 (-)NCBI
SpeTri2.0NW_0049366612,236,121 - 2,241,086 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005336467 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005336467   ⟸   XM_005336410
- UniProtKB: I3MP39 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015069 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000013504 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015071 UniProtKB/TrEMBL
InterPro RNA_pol_II-assoc_Paf1 UniProtKB/TrEMBL
NCBI Gene Paf1 ENTREZGENE
PANTHER PTHR23188 UniProtKB/TrEMBL
Pfam Paf1 UniProtKB/TrEMBL
UniProt I3MP39 ENTREZGENE, UniProtKB/TrEMBL