Cavin2 (caveolae associated protein 2) - Rat Genome Database

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Gene: Cavin2 (caveolae associated protein 2) Ictidomys tridecemlineatus
Analyze
Symbol: Cavin2
Name: caveolae associated protein 2
RGD ID: 12636670
Description: ENCODES a protein that exhibits phosphatidylserine binding (inferred); protein kinase C binding (inferred); INVOLVED IN plasma membrane tubulation (inferred); ASSOCIATED WITH genetic disease (ortholog); Hirschsprung's disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN caveola (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: caveolae-associated protein 2; Sdpr; serum deprivation response
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303150,371,498 - 150,384,175 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365066,453,652 - 6,466,770 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365066,453,914 - 6,466,574 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cavin2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303150,371,498 - 150,384,175 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365066,453,652 - 6,466,770 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365066,453,914 - 6,466,574 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAVIN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382191,834,310 - 191,847,088 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2191,834,310 - 191,847,088 (-)EnsemblGRCh38hg38GRCh38
GRCh372192,699,036 - 192,711,814 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362192,407,281 - 192,420,226 (-)NCBINCBI36Build 36hg18NCBI36
Build 342192,525,246 - 192,537,296NCBI
Celera2186,294,205 - 186,307,180 (-)NCBICelera
Cytogenetic Map2q32.3NCBI
HuRef2184,557,290 - 184,570,265 (-)NCBIHuRef
CHM1_12192,705,004 - 192,717,980 (-)NCBICHM1_1
T2T-CHM13v2.02192,322,523 - 192,335,302 (-)NCBIT2T-CHM13v2.0
Cavin2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39151,328,285 - 51,342,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl151,328,285 - 51,342,119 (+)EnsemblGRCm39 Ensembl
GRCm38151,289,126 - 51,302,960 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl151,289,126 - 51,302,960 (+)EnsemblGRCm38mm10GRCm38
MGSCv37151,345,970 - 51,359,804 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36151,233,671 - 51,247,505 (+)NCBIMGSCv36mm8
Celera151,588,665 - 51,602,512 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.13NCBI
Cavin2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8957,794,007 - 57,806,024 (-)NCBIGRCr8
mRatBN7.2950,302,079 - 50,314,096 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl950,301,206 - 50,314,147 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx958,844,832 - 58,856,873 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0963,967,673 - 63,979,714 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0962,263,643 - 62,275,680 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0955,244,136 - 55,256,153 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl955,243,255 - 55,256,340 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0954,940,738 - 54,952,755 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4947,373,044 - 47,385,061 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1947,374,457 - 47,386,475 (-)NCBI
Celera947,939,632 - 47,951,653 (-)NCBICelera
Cytogenetic Map9q22NCBI
Cavin2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554037,458,900 - 7,471,257 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554037,459,038 - 7,471,809 (+)NCBIChiLan1.0ChiLan1.0
CAVIN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21394,508,021 - 94,520,975 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B94,523,005 - 94,535,934 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B79,127,676 - 79,140,585 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B197,042,366 - 197,055,326 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B197,042,366 - 197,055,326 (-)Ensemblpanpan1.1panPan2
CAVIN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1372,300,301 - 2,307,957 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha373,248,356 - 3,262,084 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0372,188,764 - 2,202,518 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl372,188,758 - 2,202,518 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1372,198,415 - 2,212,031 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0372,165,704 - 2,180,655 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0372,178,440 - 2,192,258 (-)NCBIUU_Cfam_GSD_1.0
CAVIN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1596,474,284 - 96,490,016 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11596,476,675 - 96,490,231 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215107,752,053 - 107,765,594 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAVIN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11077,371,220 - 77,384,574 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040122,090,276 - 122,103,217 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cavin2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248544,354,024 - 4,364,992 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248544,354,099 - 4,364,992 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005324359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000024287   ⟹   ENSSTOP00000019947
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365066,453,652 - 6,466,770 (+)Ensembl
RefSeq Acc Id: XM_005324359   ⟹   XP_005324416
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303150,371,498 - 150,384,175 (-)NCBI
SpeTri2.0NW_0049365066,453,914 - 6,466,574 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005324416 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000019947.1
GenBank Protein KAG3274899 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005324416   ⟸   XM_005324359
- UniProtKB: I3N6F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000019947   ⟸   ENSSTOT00000024287


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025394 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024287.2 UniProtKB/TrEMBL
InterPro Cavin_fam UniProtKB/TrEMBL
NCBI Gene Sdpr ENTREZGENE
PANTHER PTHR15240 UniProtKB/TrEMBL
  PTHR15240:SF1 UniProtKB/TrEMBL
Pfam PTRF_SDPR UniProtKB/TrEMBL
UniProt I3N6F1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-28 Cavin2  caveolae associated protein 2  Sdpr  serum deprivation response  Symbol and/or name change 5135510 APPROVED