Ca14 (carbonic anhydrase 14) - Rat Genome Database

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Gene: Ca14 (carbonic anhydrase 14) Ictidomys tridecemlineatus
Analyze
Symbol: Ca14
Name: carbonic anhydrase 14
RGD ID: 12635585
Description: ENCODES a protein that exhibits carbonate dehydratase activity (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,514,788 - 21,521,689 (+)NCBI
SpeTri2.0NW_004936580545,221 - 552,071 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Ca14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,514,788 - 21,521,689 (+)NCBI
SpeTri2.0NW_004936580545,221 - 552,071 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1150,257,251 - 150,265,078 (+)EnsemblGRCh38hg38GRCh38
GRCh381150,257,258 - 150,265,862 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371150,230,169 - 150,237,478 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361148,488,047 - 148,504,102 (+)NCBINCBI36hg18NCBI36
Build 341147,043,290 - 147,050,549NCBI
Celera1123,345,949 - 123,353,209 (+)NCBI
Cytogenetic Map1q21.2NCBI
HuRef1121,608,885 - 121,616,145 (+)NCBIHuRef
CHM1_11151,625,869 - 151,633,204 (+)NCBICHM1_1
Car14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,805,080 - 95,812,443 (-)NCBIGRCm39mm39
GRCm39 Ensembl395,805,080 - 95,812,003 (-)Ensembl
GRCm38395,897,768 - 95,905,117 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,897,768 - 95,904,691 (-)EnsemblGRCm38mm10GRCm38
MGSCv37395,701,723 - 95,708,562 (-)NCBIGRCm37mm9NCBIm37
MGSCv36395,983,205 - 95,990,044 (-)NCBImm8
Celera397,331,353 - 97,338,218 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
Ca14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22183,442,263 - 183,449,207 (-)NCBI
Rnor_6.0 Ensembl2198,010,349 - 198,016,898 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02198,010,142 - 198,017,635 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02217,500,302 - 217,507,935 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,683,916 - 190,690,229 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2175,971,924 - 175,978,237 (-)NCBICelera
Cytogenetic Map2q34NCBI
Ca14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955413510,089 - 516,892 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955413510,089 - 516,892 (-)NCBIChiLan1.0ChiLan1.0
CA14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11129,253,787 - 129,261,676 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,253,787 - 129,261,676 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01125,602,521 - 125,610,323 (+)NCBIMhudiblu_PPA_v0panPan3
CA14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,504,181 - 59,510,497 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,504,483 - 59,510,127 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1758,950,038 - 58,956,854 (+)NCBI
ROS_Cfam_1.01760,519,100 - 60,525,928 (+)NCBI
UMICH_Zoey_3.11759,349,547 - 59,356,380 (+)NCBI
UNSW_CanFamBas_1.01759,433,284 - 59,440,110 (+)NCBI
UU_Cfam_GSD_1.01760,161,286 - 60,168,105 (+)NCBI
CA14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,821,578 - 98,828,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,821,577 - 98,828,934 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CA14
(Chlorocebus sabaeus - African green monkey)
No map positions available.
Ca14
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477218,011,094 - 18,018,585 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005331148   ⟹   XP_005331205
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505821,514,788 - 21,521,689 (+)NCBI
SpeTri2.0NW_004936580545,221 - 552,071 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021730413   ⟹   XP_021586088
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505821,514,948 - 21,521,689 (+)NCBI
SpeTri2.0NW_004936580545,316 - 552,071 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005331205 (Get FASTA)   NCBI Sequence Viewer  
  XP_021586088 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005331205   ⟸   XM_005331148
- UniProtKB: I3MXB3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021586088   ⟸   XM_021730413
- Sequence:
Protein Domains
Alpha-carbonic anhydrase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027815 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000016758 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020015 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro Carbonic_anhydrase_a UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a_sf UniProtKB/TrEMBL
  Carbonic_anhydrase_CA14 UniProtKB/TrEMBL
NCBI Gene Ca14 ENTREZGENE
PANTHER PTHR18952 UniProtKB/TrEMBL
  PTHR18952:SF84 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt I3MXB3 ENTREZGENE, UniProtKB/TrEMBL