LOC101977899 (vasoactive intestinal peptide) - Rat Genome Database

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Gene: LOC101977899 (vasoactive intestinal peptide) Ictidomys tridecemlineatus
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Symbol: LOC101977899
Name: vasoactive intestinal peptide
RGD ID: 12632366
Description: ENCODES a protein that exhibits hormone activity (ortholog); peptide hormone receptor binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); antibacterial humoral response (ortholog); antifungal humoral response (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); Animal Hepatitis (ortholog); ankylosing spondylitis (ortholog); FOUND IN neuron projection terminus (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: vasoactive intestinal peptide, transcript variant X1; vasoactive intestinal peptide, transcript variant X2; vasoactive intestinal peptide, transcript variant X3; Vip; VIP peptides
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946138,173,756 - 138,182,789 (+)NCBI
SpeTri2.0NW_0049364895,425,778 - 5,434,483 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC101977899
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946138,173,756 - 138,182,789 (+)NCBI
SpeTri2.0NW_0049364895,425,778 - 5,434,483 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6152,750,797 - 152,759,765 (+)EnsemblGRCh38hg38GRCh38
GRCh386152,750,797 - 152,759,765 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh376153,071,932 - 153,080,895 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366153,113,626 - 153,122,593 (+)NCBINCBI36hg18NCBI36
Build 346153,164,046 - 153,173,012NCBI
Celera6153,805,638 - 153,814,605 (+)NCBI
Cytogenetic Map6q25.2NCBI
HuRef6150,635,051 - 150,644,019 (+)NCBIHuRef
CHM1_16153,335,885 - 153,344,853 (+)NCBICHM1_1
Vip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39105,589,131 - 5,597,617 (+)NCBIGRCm39mm39
GRCm39 Ensembl105,589,218 - 5,597,617 (+)Ensembl
GRCm38105,639,193 - 5,647,617 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl105,639,218 - 5,647,617 (+)EnsemblGRCm38mm10GRCm38
MGSCv37104,698,927 - 4,707,323 (-)NCBIGRCm37mm9NCBIm37
MGSCv36104,698,927 - 4,707,323 (-)NCBImm8
Celera105,575,276 - 5,583,675 (+)NCBICelera
Cytogenetic Map10A1NCBI
Vip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2142,064,878 - 42,073,219 (+)NCBI
Rnor_6.0 Ensembl142,169,501 - 42,177,582 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0142,169,307 - 42,177,582 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0143,498,288 - 43,506,465 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4136,361,513 - 36,369,594 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1136,365,863 - 36,372,520 (+)NCBI
Celera137,742,285 - 37,750,366 (+)NCBICelera
Cytogenetic Map1q11NCBI
Vip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554399,021,904 - 9,031,792 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554399,021,923 - 9,031,783 (-)NCBIChiLan1.0ChiLan1.0
VIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16155,236,848 - 155,263,730 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6155,254,652 - 155,263,730 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06150,564,545 - 150,573,582 (+)NCBIMhudiblu_PPA_v0panPan3
VIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1142,941,655 - 42,950,160 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl142,941,224 - 42,950,700 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha143,780,582 - 43,789,690 (+)NCBI
ROS_Cfam_1.0143,121,172 - 43,130,243 (+)NCBI
UMICH_Zoey_3.1142,993,230 - 43,002,341 (+)NCBI
UNSW_CanFamBas_1.0142,856,855 - 42,865,968 (+)NCBI
UU_Cfam_GSD_1.0143,344,732 - 43,353,814 (+)NCBI
VIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,611,311 - 13,620,269 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1113,611,786 - 13,620,250 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2115,890,605 - 15,896,314 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103240743
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11380,217,602 - 80,228,320 (+)NCBI
ChlSab1.1 Ensembl1380,218,572 - 80,228,278 (+)Ensembl
Vero_WHO_p1.0NW_02366604052,548,641 - 52,557,724 (+)NCBI
Vip
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247855,466,429 - 5,487,763 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005321382   ⟹   XP_005321439
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946138,173,756 - 138,182,789 (+)NCBI
SpeTri2.0NW_0049364895,425,778 - 5,434,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013356895   ⟹   XP_013212349
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946138,173,756 - 138,182,789 (+)NCBI
SpeTri2.0NW_0049364895,425,778 - 5,434,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021723923   ⟹   XP_021579598
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946138,173,765 - 138,182,789 (+)NCBI
SpeTri2.0NW_0049364895,425,778 - 5,434,483 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040283457   ⟹   XP_040139391
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946138,173,756 - 138,182,789 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005321439   ⟸   XM_005321382
- Peptide Label: isoform X1
- UniProtKB: I3MA52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013212349   ⟸   XM_013356895
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_021579598   ⟸   XM_021723923
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040139391   ⟸   XM_040283457
- Peptide Label: isoform X2
Protein Domains
GLUCAGON


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007656 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000006840 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007650 UniProtKB/TrEMBL
InterPro Glucagon_GIP_secretin_VIP UniProtKB/TrEMBL
  VIP UniProtKB/TrEMBL
NCBI Gene Vip ENTREZGENE
PANTHER PTHR11213:SF5 UniProtKB/TrEMBL
Pfam Hormone_2 UniProtKB/TrEMBL
PROSITE GLUCAGON UniProtKB/TrEMBL
SMART GLUCA UniProtKB/TrEMBL
UniProt I3MA52 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101977899  vasoactive intestinal peptide  Vip  vasoactive intestinal peptide  Symbol and/or name change 5135510 APPROVED