Tceal8 (transcription elongation factor A like 8)

Gene: Tceal8 (transcription elongation factor A like 8) Ictidomys tridecemlineatus

Analyze

Symbol:

Tceal8

Name:

transcription elongation factor A like 8

RGD ID:

12630722

Description:

ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Pelizaeus-Merzbacher disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

transcription elongation factor A protein-like 8

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	61,652,677 - 61,654,899 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936547	7,973,152 - 7,975,311 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936547	7,974,317 - 7,975,311 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

Pelizaeus-Merzbacher disease (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

Tceal8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	61,652,677 - 61,654,899 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936547	7,973,152 - 7,975,311 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936547	7,974,317 - 7,975,311 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCEAL8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	103,252,995 - 103,255,155 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	103,252,995 - 103,255,192 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	102,507,923 - 102,510,083 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	102,394,579 - 102,396,777 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	102,314,068 - 102,316,266	NCBI
Celera	X	102,946,932 - 102,949,130 (-)	NCBI		Celera
Cytogenetic Map	X	q22.1	NCBI
HuRef	X	92,171,640 - 92,193,113 (-)	NCBI		HuRef
CHM1_1	X	102,400,921 - 102,403,119 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	101,699,973 - 101,702,133 (-)	NCBI		T2T-CHM13v2.0

Tceal8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	135,069,733 - 135,073,000 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	135,069,733 - 135,073,091 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	136,168,984 - 136,172,251 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	136,168,984 - 136,172,342 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	132,703,523 - 132,706,790 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	131,516,445 - 131,518,569 (-)	NCBI		MGSCv36	mm8
Celera	X	119,485,040 - 119,488,655 (-)	NCBI		Celera
Cytogenetic Map	X	F1	NCBI
cM Map	X	57.4	NCBI

Tceal8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	103,962,930 - 103,965,000 (-)	NCBI		GRCr8
mRatBN7.2	X	99,171,307 - 99,173,377 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	99,171,177 - 99,173,710 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	101,300,741 - 101,302,811 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	104,811,355 - 104,813,425 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	102,368,405 - 102,370,475 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	106,713,319 - 106,715,391 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	106,713,320 - 106,715,391 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	106,411,786 - 106,413,858 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	123,481,666 - 123,482,635 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	123,555,099 - 123,556,060 (-)	NCBI
Celera	X	99,972,106 - 99,974,177 (+)	NCBI		Celera
Cytogenetic Map	X	q32	NCBI

Tceal8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955548	391,202 - 393,533 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955548	391,202 - 393,533 (-)	NCBI	ChiLan1.0	ChiLan1.0

TCEAL8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	102,865,215 - 102,867,424 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	102,868,820 - 102,871,029 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	92,482,577 - 92,484,803 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	102,861,350 - 102,863,553 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

TCEAL8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	76,431,349 - 76,433,574 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	62,852,555 - 62,854,546 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	78,242,480 - 78,244,472 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	78,242,242 - 78,244,418 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	75,719,740 - 75,721,731 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	77,411,803 - 77,413,794 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	77,173,323 - 77,175,314 (-)	NCBI		UU_Cfam_GSD_1.0

TCEAL8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	84,175,200 - 84,177,427 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	84,175,196 - 84,177,431 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	97,963,379 - 97,965,605 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TCEAL8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	91,161,891 - 91,164,089 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	91,162,333 - 91,164,034 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	16,019,322 - 16,021,545 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tceal8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624954	624,063 - 626,248 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624954	624,043 - 626,248 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021728786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000004371 ⟹ ENSSTOP00000003923

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936547	7,973,152 - 7,975,311 (+)	Ensembl

RefSeq Acc Id:

XM_021728786 ⟹ XP_021584461

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	61,652,677 - 61,654,899 (+)	NCBI
SpeTri2.0	NW_004936547	7,974,317 - 7,975,311 (+)	NCBI

Sequence:

show sequence

GATTAATTTATTCCAAAAGGAAATAATAAAAAAAAATCAACATGCAAAAGTCTTGTGAAGAAAA
TGAAGGAAAACAGAACATGCCAAAGGCAGAAGAAGACCATCCTTCCGAAGATGTACCACAGGAA
ACAGAAGGAAACCCTCAACCTTCCCAAGAAGGTGTAAGCCAGGAAGCAGAAGGAAACCTTAGAG
GAGGGCCTGCACAACCTGGCCAAGGATTTAAAGAGGACACACCTGTTAGGCATTTGGACCCTGA
AGAAATGATTAGAGGAGTAGATGAGTTGGAAAGGCTTAGGGAAGAGATCAGAAGAGTAAGAAAT
AAGTTCGTGATGATGCATTGGAAACAAAGACATTCACGCAGCCGCCCTTATCCTGTGTGTTTCA
GGCCTTGAATTCCTTTTTGTCTGATATTAAAATCAAGCCCCTGCTTTCTTTATGTTAGCATTTT
ATGATGTATCTTTGACTTTCATTTTACTTTTAATTACATGGTGGTATTGTTTTAGGTAGTTTCT
TTGTTATCAGCATTTCATTGGATTTTGGATTTTGACCTACTTTCCAGGTTTATTTTTCAATTGG
AAAGTTTCACACATATGCATGGAAATATGTTCATTCTGTATGTACAGTAAAAACGTAACAGGTT
ACAAAGCAGCATATTTAGTATCAGCTCACATATGTAGGATACAATTCCAAATTTTGTGTGTGTA
TACATACATACATATCTCAAACTTAACTGTGCTTATTCCTGTGTGGTGTGAAGTTTTGTTTTTG
TTTTGCTTTTTGATTATATGTATTTTTTAATGAATACCTTTCACACACACAAAGAATTGAAGAT
TTTTTTAATAAGTAATAGTTGATCAAAAATAGTTTGCAACTAGCTTGTAAGGGCAATGGGGGCA
CCTAAACTCTTGATGAAACAACTATAAAAAGGAAATGTAAACCTCAAGTTACCTCTGGATTTCT
TTGCCAGAGGAATAAAACTGGCAATCATTACAGAT

hide sequence

RefSeq Acc Id:

XM_040283027 ⟹ XP_040138961

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	61,652,704 - 61,654,899 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_021584461	(Get FASTA)	NCBI Sequence Viewer
	XP_040138961	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000003923.1
GenBank Protein	KAG3272553	(Get FASTA)	NCBI Sequence Viewer
	KAG3272554	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021584461 ⟸ XM_021728786
- UniProtKB:	I3M440 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQKSCEENEGKQNMPKAEEDHPSEDVPQETEGNPQPSQEGVSQEAEGNLRGGPAQPGQGFKEDT PVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYPVCFRP hide sequence

RefSeq Acc Id:	XP_040138961 ⟸ XM_040283027
- UniProtKB:	I3M440 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000003923 ⟸ ENSSTOT00000004371

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000004386	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000004371.2	UniProtKB/TrEMBL
InterPro	TF_A-like/BEX	UniProtKB/TrEMBL
NCBI Gene	Tceal8	ENTREZGENE
Pfam	BEX	UniProtKB/TrEMBL
UniProt	I3M440	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar