Etnppl (ethanolamine-phosphate phospho-lyase) - Rat Genome Database

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Gene: Etnppl (ethanolamine-phosphate phospho-lyase) Ictidomys tridecemlineatus
Analyze
Symbol: Etnppl
Name: ethanolamine-phosphate phospho-lyase
RGD ID: 12630650
Description: ENCODES a protein that exhibits ethanolamine-phosphate phospho-lyase activity (inferred); lyase activity (inferred); pyridoxal phosphate binding (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530111,876,410 - 11,894,779 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493656356,776 - 74,403 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493656356,216 - 74,591 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Etnppl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530111,876,410 - 11,894,779 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493656356,776 - 74,403 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493656356,216 - 74,591 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ETNPPL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384108,742,053 - 108,763,053 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4108,742,048 - 108,763,054 (-)EnsemblGRCh38hg38GRCh38
GRCh374109,663,209 - 109,684,209 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364109,882,645 - 109,903,658 (-)NCBINCBI36Build 36hg18NCBI36
Build 344110,020,807 - 110,041,813NCBI
Celera4106,958,027 - 106,978,961 (-)NCBICelera
Cytogenetic Map4q25NCBI
HuRef4105,395,013 - 105,416,012 (-)NCBIHuRef
CHM1_14109,639,905 - 109,660,851 (-)NCBICHM1_1
T2T-CHM13v2.04112,045,047 - 112,066,004 (-)NCBIT2T-CHM13v2.0
Etnppl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393130,411,097 - 130,429,399 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3130,411,097 - 130,431,170 (+)EnsemblGRCm39 Ensembl
GRCm383130,617,448 - 130,635,750 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3130,617,448 - 130,637,521 (+)EnsemblGRCm38mm10GRCm38
MGSCv373130,320,366 - 130,338,668 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363130,606,730 - 130,624,903 (+)NCBIMGSCv36mm8
Celera3137,132,851 - 137,151,194 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map360.47NCBI
Etnppl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82221,847,210 - 221,868,827 (+)NCBIGRCr8
mRatBN7.22219,173,048 - 219,194,646 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2219,172,978 - 219,192,212 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02235,738,377 - 235,760,351 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2235,738,416 - 235,760,352 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02254,289,706 - 254,309,474 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2211,440,271 - 211,459,741 (+)NCBICelera
Cytogenetic Map2q43NCBI
Etnppl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554961,275,051 - 1,292,349 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554961,274,929 - 1,292,802 (+)NCBIChiLan1.0ChiLan1.0
ETNPPL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23106,838,230 - 106,859,275 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14107,133,189 - 107,154,245 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04101,244,460 - 101,265,672 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14111,815,214 - 111,836,412 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4111,815,226 - 111,836,412 (-)Ensemblpanpan1.1panPan2
ETNPPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13229,073,846 - 29,093,077 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3228,963,168 - 29,093,101 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3212,927,060 - 12,947,164 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03229,302,397 - 29,322,276 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3229,302,405 - 29,321,527 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13229,296,692 - 29,316,808 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03229,041,213 - 29,060,278 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03210,794,955 - 10,814,884 (+)NCBIUU_Cfam_GSD_1.0
ETNPPL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8113,363,042 - 113,384,774 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18113,363,047 - 113,384,783 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28121,603,071 - 121,622,426 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ETNPPL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1756,670,688 - 56,692,069 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl756,669,718 - 56,691,026 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603735,296,344 - 35,316,825 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Etnppl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624830924,185 - 938,388 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624830923,034 - 938,773 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000027552   ⟹   ENSSTOP00000015559
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493656356,776 - 74,403 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000035680   ⟹   ENSSTOP00000027477
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493656356,776 - 74,403 (-)Ensembl
RefSeq Acc Id: XM_040293130   ⟹   XP_040149064
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530111,876,410 - 11,894,779 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040149064 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015559.2
  ENSSTOP00000027477.1
GenBank Protein KAG3275830 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040149064   ⟸   XM_040293130
- UniProtKB: I3MTW4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000015559   ⟸   ENSSTOT00000027552
RefSeq Acc Id: ENSSTOP00000027477   ⟸   ENSSTOT00000035680


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021812 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027552.2 UniProtKB/TrEMBL
  ENSSTOT00000035680.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/TrEMBL
InterPro Aminotrans_3 UniProtKB/TrEMBL
  Aminotrans_3_PPA_site UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_small UniProtKB/TrEMBL
NCBI Gene Etnppl ENTREZGENE
PANTHER ETHANOLAMINE-PHOSPHATE PHOSPHO-LYASE UniProtKB/TrEMBL
  PTHR45688 UniProtKB/TrEMBL
Pfam Aminotran_3 UniProtKB/TrEMBL
PROSITE AA_TRANSFER_CLASS_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/TrEMBL
UniProt A0A287D1S9_ICTTR UniProtKB/TrEMBL
  I3MTW4 ENTREZGENE, UniProtKB/TrEMBL