LOC101977445 (trefoil factor 3-like) - Rat Genome Database

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Gene: LOC101977445 (trefoil factor 3-like) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101977445 (Ensembl: TFF3)
Name: trefoil factor 3-like (Ensembl:trefoil factor 3)
RGD ID: 12629942
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN maintenance of gastrointestinal epithelium (inferred); regulation of glucose metabolic process (inferred); FOUND IN extracellular region (inferred); extracellular space (inferred); secretory granule (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497135,913,419 - 35,916,317 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365001,551,524 - 1,571,352 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365001,551,524 - 1,554,379 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005323580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000000590   ⟹   ENSSTOP00000000536
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365001,551,524 - 1,571,352 (+)Ensembl
RefSeq Acc Id: XM_005323580   ⟹   XP_005323637
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440497135,913,419 - 35,916,317 (-)NCBI
SpeTri2.0NW_0049365001,551,524 - 1,554,379 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005323637 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000536.2
Reference Protein Sequences
RefSeq Acc Id: XP_005323637   ⟸   XM_005323580
- UniProtKB: I3LWZ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000000536   ⟸   ENSSTOT00000000590
Protein Domains
P-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000593 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000590.3 UniProtKB/TrEMBL
Gene3D-CATH 4.10.110.10 UniProtKB/TrEMBL
InterPro P_trefoil_chordata UniProtKB/TrEMBL
  P_trefoil_dom UniProtKB/TrEMBL
  P_trefoil_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC101977445 ENTREZGENE
PANTHER PTHR13826 UniProtKB/TrEMBL
  TREFOIL FACTOR 3 UniProtKB/TrEMBL
Pfam Trefoil UniProtKB/TrEMBL
PRINTS PTREFOIL UniProtKB/TrEMBL
PROSITE P_TREFOIL_2 UniProtKB/TrEMBL
SMART SM00018 UniProtKB/TrEMBL
Superfamily-SCOP SSF57492 UniProtKB/TrEMBL
UniProt I3LWZ5 ENTREZGENE, UniProtKB/TrEMBL