Dcbld1 (discoidin, CUB and LCCL domain containing 1)

Gene: Dcbld1 (discoidin, CUB and LCCL domain containing 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Dcbld1

Name:

discoidin, CUB and LCCL domain containing 1

RGD ID:

12628434

Description:

ENCODES a protein that exhibits signaling receptor activity (inferred); ASSOCIATED WITH autistic disorder (ortholog); body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

discoidin, CUB and LCCL domain-containing protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	108,440,398 - 108,500,671 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936658	547,074 - 607,637 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936658	547,245 - 606,540 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

body dysmorphic disorder (ISO)

congenital disorder of glycosylation Iaa (ISO)

epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

melanoma (ISO)

microcephaly (ISO)

Tremor (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

Molecular Function

signaling receptor activity (IEA)

References

Genomics

Comparative Map Data

Dcbld1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	108,440,398 - 108,500,671 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936658	547,074 - 607,637 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936658	547,245 - 606,540 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DCBLD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	117,482,674 - 117,569,858 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	117,453,817 - 117,569,858 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	117,803,837 - 117,891,021 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	117,910,513 - 117,997,714 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	117,910,512 - 117,997,711	NCBI
Celera	6	118,546,716 - 118,633,918 (+)	NCBI		Celera
Cytogenetic Map	6	q22.1	NCBI
HuRef	6	115,384,015 - 115,471,652 (+)	NCBI		HuRef
CHM1_1	6	118,067,798 - 118,154,964 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	118,666,943 - 118,754,094 (+)	NCBI		T2T-CHM13v2.0

Dcbld1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	52,109,674 - 52,197,474 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	52,109,715 - 52,197,474 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	52,233,578 - 52,321,378 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	52,233,619 - 52,321,378 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	51,953,425 - 52,041,183 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	51,922,034 - 52,008,690 (+)	NCBI		MGSCv36	mm8
Celera	10	53,070,785 - 53,158,787 (+)	NCBI		Celera
Cytogenetic Map	10	B3	NCBI
cM Map	10	26.41	NCBI

Dcbld1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	32,161,241 - 32,254,391 (+)	NCBI		GRCr8
mRatBN7.2	20	31,618,556 - 31,711,697 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	31,618,542 - 31,711,692 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	20	33,359,062 - 33,455,161 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	33,359,196 - 33,453,766 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	35,139,064 - 35,233,838 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	30,945,776 - 31,038,692 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	31,031,260 - 31,051,759 (+)	NCBI
Celera	20	33,016,305 - 33,109,071 (+)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

Dcbld1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955436	668,509 - 750,236 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955436	688,546 - 726,952 (+)	NCBI	ChiLan1.0	ChiLan1.0

DCBLD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	137,496,418 - 137,563,797 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	135,389,437 - 135,457,067 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	115,290,931 - 115,358,249 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	119,434,847 - 119,499,514 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	119,434,847 - 119,519,282 (+)	Ensembl	panpan1.1		panPan2

DCBLD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	57,733,681 - 57,809,624 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	57,716,008 - 57,799,929 (+)	NCBI	CanFam3.1		canFam3	CanFam3.1
CanFam3.1 Ensembl	1	57,716,008 - 57,799,929 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	58,512,102 - 58,610,154 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	57,892,944 - 57,991,163 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	57,892,806 - 57,981,253 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	57,794,065 - 57,892,541 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	57,635,303 - 57,733,506 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	58,266,418 - 58,364,684 (+)	NCBI		UU_Cfam_GSD_1.0

DCBLD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	44,276,675 - 44,373,687 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	44,301,108 - 44,373,712 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	49,645,883 - 49,718,886 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DCBLD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	56,280,884 - 56,346,779 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	56,280,888 - 56,346,610 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	28,618,483 - 28,684,764 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dcbld1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624798	12,229,408 - 12,304,371 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624798	12,231,258 - 12,303,658 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005336089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000024267 ⟹ ENSSTOP00000017132

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936658	547,074 - 607,637 (+)	Ensembl

RefSeq Acc Id:

XM_005336089 ⟹ XP_005336146

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	108,440,398 - 108,500,671 (+)	NCBI
SpeTri2.0	NW_004936658	547,245 - 606,540 (+)	NCBI

Sequence:

show sequence

GGTGCCGGGCAGCGGCTGCGCCCCATCCTGGCGCCGCGCTGGGGCACGGAGGAGGCGGCCCGGC
TGGGGCAGCGGCGGCGCAGGGCCCGTCGAAGGGAGGACGAGCCTGGCAAGCTGGCTCCCGGAGG
GGCTATGGTGCCCCGCGCCCGCGGCGGCGGCGGCGCGCTGGCTGCGGCTCCAGGACCCGGCCTC
CTGGCCCTGCTGCTCGCTGTCTGCGCCCCGCTCTGGCTGCAGGCGGAGGAGCTCGGTGATGGCT
GTGGGCACATAGTGACCTATCAGGATAGTGGAACAATGACATCTAAGAATTATCCAGGAACTTA
CCCCAATCACACTGTTTGCGAAAAGACTATCACAGTCCCAAAAGGGAAGAGGCTAATTCTGAGG
TTGGGAGATTTGGATATTGAATCCCAGACCTGTGCTTCTGACTATCTTCTCTTCACCAGTTCTT
CAGATCAGTATGGTCCATATTGTGGAAGAATGACTGTTCCGAGAGAACTCTTGCTGAATACAAG
TGAAGTAACTGTCCGTTTTGAGAGTGGATCCCACATTTCTGGTCGAGGTTTCTTGCTGACCTAT
GCCAGCAGCGACCATCCAGATTTAATTACATGTTTGGAACGAGGTAACCACTATTTGAAGACAG
AATACAGCAAATTCTGCCCAGCTGGTTGTAGAGACATAGCAGGAGACATTTCTGGGAACATAAT
AGATGGCTATAGAGATACCTCTTTGTTGTGTAAAGCTGCTATCCATGCAGGAATAATTGCAGAT
GAACTGGGTGGCCGGATCAGTGTGCTTCTGCGCAAGGGGATAAGCCGCTATGAAGGCATCCTGG
CCAATGGTGTGCTCTCAAGGATTGGTTCCCTGTCAGAAAAGCGATTTCTGTTTACCTCCACTGA
GAATGACTCACTGGTGTGGCACAAAACAGTTTCAAACACTGATGTTTCAACCGAGAGAGACGAC
AAGACAATCACAAAGCCCATCCCCTCAGAAGACATGCCCACAGGAATAAACATTACAACTGTGG
CGATTCCATTGGTGCTACTTGTTGCCCTTCTGCTGGCTGGAATGGGGGTCTTTGCCGCCCTTAG
AAAGAAGAAGAAGAAAGGAAATCCATATATATCAGCTGAGGCCCAGAAAACAGGTTGTTGGAAG
CAGATTAAATATCCCTTTGCCAGACATCAATCAGCTGAGTTTACCATCACCTATGACAATGAGA
AGGAGATTACACAAAAGTTAGATCTCATCACAAGTGATATGGCAGATTACCAGCAGCCTCTCAT
GATTGGAACCGGGACAGTAGCCAGGAAGGGCTCCACCTTCCGGCCCATAGACACTGACGCTGAC
GAGGCCGGGACCGGCGCCGAGGCCAGCAGCCACTACGACTGCCCCCAGCGCAGTGCTGGCCGCC
ACGAGTACGCGCTGCCCTTGACCCACGCGGAGCCCGAGTACGCCACGCCCATCGTGGAGCGGCA
CCTGCCGCGGGCCCACACCTTCTCGGCCCAGAGCGGCTACCACGTTCCCGGGCCCAGGCCGGCT
CACAAACATTCCCTTTCTTCCGGCAGCTTCTCCCCTGAGGCAGGGGCCACCAAGAGCGGAGACT
ATCAGTTGCCACAAAGCCCCAAGCCCGCCGACAGGGGCTACGACAAGCCCAAAGCCAGCAGCAG
CTTTGCTGCAGAGAACAGAGACTTCGCCTCTCAGAAGCCAGAGACGAATCCCGGGGTGAATGAT
GGTTATTCAGCCCCCAGAGACTGCCTCACCCCCCTCAACCAGACAGCCGTGACCGCTCTTCTGT
GAACACAATGTGAAAGAAACCTGCTGTGGTACTGAGCGTGCGGTTGTGGCCAGTCACTGGAAGA
TGGGAGAGTGCTGTTCAAGTTGTGTGTGCGTGTGCACGTGACTCAATAGGATCCTAGAGAGAAC
TTCTCATACTGTTTACAAAACTCTGCAGCTGGTTTTGTTCTGACCCTTAGGCGAGAGCCTGTTG
GTTTTTGTTGGACTAGAAAAATGGGGGGGGAAAATTCTGATGGCATTTTCATTTCTCTATAACT
GTGATATTGAGCTGCTTTCTTGCAAAATGTGCAATCTGTACAGAGTTGTATTTAACAAGAATTA
AAGTAACTTAAGTTTGCTTTGTCAGATTTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005336146	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000017132.2
GenBank Protein	KAG3290128	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005336146 ⟸ XM_005336089

- UniProtKB:

I3MYD6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVPRARGGGGALAAAPGPGLLALLLAVCAPLWLQAEELGDGCGHIVTYQDSGTMTSKNYPGTYP
NHTVCEKTITVPKGKRLILRLGDLDIESQTCASDYLLFTSSSDQYGPYCGRMTVPRELLLNTSE
VTVRFESGSHISGRGFLLTYASSDHPDLITCLERGNHYLKTEYSKFCPAGCRDIAGDISGNIID
GYRDTSLLCKAAIHAGIIADELGGRISVLLRKGISRYEGILANGVLSRIGSLSEKRFLFTSTEN
DSLVWHKTVSNTDVSTERDDKTITKPIPSEDMPTGINITTVAIPLVLLVALLLAGMGVFAALRK
KKKKGNPYISAEAQKTGCWKQIKYPFARHQSAEFTITYDNEKEITQKLDLITSDMADYQQPLMI
GTGTVARKGSTFRPIDTDADEAGTGAEASSHYDCPQRSAGRHEYALPLTHAEPEYATPIVERHL
PRAHTFSAQSGYHVPGPRPAHKHSLSSGSFSPEAGATKSGDYQLPQSPKPADRGYDKPKASSSF
AAENRDFASQKPETNPGVNDGYSAPRDCLTPLNQTAVTALL

hide sequence

RefSeq Acc Id:

ENSSTOP00000017132 ⟸ ENSSTOT00000024267

Protein Domains

CUB LCCL

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000019521	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000024267.2	UniProtKB/TrEMBL
Gene3D-CATH	2.170.130.20	UniProtKB/TrEMBL
	2.60.120.290	UniProtKB/TrEMBL
InterPro	CUB_dom	UniProtKB/TrEMBL
	LCCL	UniProtKB/TrEMBL
	LCCL_sf	UniProtKB/TrEMBL
	Sperma_CUB_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Dcbld1	ENTREZGENE
PANTHER	DISCOIDIN, CUB AND LCCL DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	F5/8 TYPE C DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	CUB	UniProtKB/TrEMBL
	LCCL	UniProtKB/TrEMBL
PROSITE	CUB	UniProtKB/TrEMBL
	LCCL	UniProtKB/TrEMBL
SMART	CUB	UniProtKB/TrEMBL
	LCCL	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49854	UniProtKB/TrEMBL
	SSF69848	UniProtKB/TrEMBL
UniProt	I3MYD6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD