Mettl25b (methyltransferase like 25B) - Rat Genome Database

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Gene: Mettl25b (methyltransferase like 25B) Ictidomys tridecemlineatus
Analyze
Symbol: Mettl25b
Name: methyltransferase like 25B (Ensembl:ribosomal RNA adenine dimethylase domain containing 1)
RGD ID: 12627977
Description: ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ribosomal RNA adenine dimethylase domain containing 1; ribosomal RNA adenine dimethylase domain containing 1, transcript variant X1; ribosomal RNA adenine dimethylase domain containing 1, transcript variant X2; Rrnad1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,853,571 - 26,862,094 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,883,996 - 5,894,464 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,883,977 - 5,892,476 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Mettl25b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,853,571 - 26,862,094 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,883,996 - 5,894,464 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,883,977 - 5,892,476 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
METTL25B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,728,469 - 156,736,960 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,728,442 - 156,736,960 (+)EnsemblGRCh38hg38GRCh38
GRCh371156,698,261 - 156,706,752 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,964,902 - 154,973,365 (+)NCBINCBI36Build 36hg18NCBI36
Celera1129,769,065 - 129,777,984 (+)NCBICelera
Cytogenetic Map1q23.1NCBI
HuRef1128,055,758 - 128,064,577 (+)NCBIHuRef
CHM1_11158,094,485 - 158,102,953 (+)NCBICHM1_1
T2T-CHM13v2.01155,864,872 - 155,873,793 (+)NCBIT2T-CHM13v2.0
Mettl25b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39387,829,908 - 87,838,337 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl387,829,908 - 87,838,024 (-)EnsemblGRCm39 Ensembl
GRCm38387,922,601 - 87,930,719 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl387,922,601 - 87,930,717 (-)EnsemblGRCm38mm10GRCm38
MGSCv37387,726,523 - 87,734,117 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,008,832 - 88,016,073 (-)NCBIMGSCv36mm8
Celera387,960,214 - 87,967,590 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.78NCBI
Mettl25b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82175,686,483 - 175,695,137 (-)NCBIGRCr8
mRatBN7.22173,388,625 - 173,397,279 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,388,625 - 173,397,279 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2180,533,456 - 180,542,052 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02178,555,812 - 178,564,408 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,155,914 - 173,164,507 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,294,052 - 187,302,691 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,294,109 - 187,302,691 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02206,697,069 - 206,705,708 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,001,177 - 180,009,775 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12179,951,283 - 179,959,881 (-)NCBI
Celera2167,337,900 - 167,346,478 (-)NCBICelera
Cytogenetic Map2q34NCBI
Mettl25b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,804,456 - 2,814,081 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,804,327 - 2,814,081 (+)NCBIChiLan1.0ChiLan1.0
METTL25B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,107,845 - 93,116,441 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1192,842,349 - 92,850,578 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01132,071,430 - 132,080,297 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,892,971 - 135,901,981 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,892,971 - 135,901,981 (+)Ensemblpanpan1.1panPan2
METTL25B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,251,838 - 41,258,130 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,245,628 - 41,257,937 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha740,739,410 - 40,745,832 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,115,235 - 41,121,650 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,097,893 - 41,121,254 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1740,897,193 - 40,903,509 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0740,950,126 - 40,956,496 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,233,824 - 41,240,247 (-)NCBIUU_Cfam_GSD_1.0
METTL25B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,358,143 - 93,366,082 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,358,140 - 93,366,169 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24101,929,781 - 101,937,664 (-)NCBISscrofa10.2Sscrofa10.2susScr3
METTL25B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,127,876 - 7,136,051 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,123,538 - 7,135,961 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,421,339 - 6,430,163 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mettl25b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,885,144 - 1,894,464 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,885,437 - 1,893,406 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000007753   ⟹   ENSSTOP00000006940
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365805,883,996 - 5,894,464 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000039317   ⟹   ENSSTOP00000025626
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365805,884,243 - 5,892,101 (+)Ensembl
RefSeq Acc Id: XM_005331403   ⟹   XP_005331460
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505826,853,573 - 26,862,094 (+)NCBI
SpeTri2.0NW_0049365805,883,977 - 5,892,476 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021730547   ⟹   XP_021586222
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505826,853,572 - 26,862,094 (+)NCBI
SpeTri2.0NW_0049365805,884,288 - 5,892,476 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040287722   ⟹   XP_040143656
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505826,853,571 - 26,862,094 (+)NCBI
RefSeq Acc Id: XM_040287723   ⟹   XP_040143657
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505826,853,571 - 26,862,094 (+)NCBI
RefSeq Acc Id: XP_005331460   ⟸   XM_005331403
- Peptide Label: isoform X1
- UniProtKB: I3MAC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021586222   ⟸   XM_021730547
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_040143657   ⟸   XM_040287723
- Peptide Label: isoform X4
- UniProtKB: A0A287CWH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040143656   ⟸   XM_040287722
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000025626   ⟸   ENSSTOT00000039317
RefSeq Acc Id: ENSSTOP00000006940   ⟸   ENSSTOT00000007753
Protein Domains
Methyltransferase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007742 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007753.3 UniProtKB/TrEMBL
  ENSSTOT00000039317.1 UniProtKB/TrEMBL
InterPro Methyltranfer_dom UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/TrEMBL
NCBI Gene Rrnad1 ENTREZGENE
PANTHER CGI-41 METHYLTRANSFERASE UniProtKB/TrEMBL
  PROTEIN RRNAD1 UniProtKB/TrEMBL
Pfam Methyltransf_32 UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
UniProt A0A287CWH0 ENTREZGENE, UniProtKB/TrEMBL
  I3MAC7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-16 Mettl25b  methyltransferase like 25B  Rrnad1  ribosomal RNA adenine dimethylase domain containing 1  Symbol and/or name change 5135510 APPROVED