Cers2 (ceramide synthase 2) - Rat Genome Database
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Gene: Cers2 (ceramide synthase 2) Ictidomys tridecemlineatus
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Symbol: Cers2
Name: ceramide synthase 2
RGD ID: 12627776
Description: ENCODES a protein that exhibits sphingosine N-acyltransferase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); negative regulation of axon regeneration (ortholog); negative regulation of Schwann cell migration (ortholog); ASSOCIATED WITH Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365801,192,843 - 1,201,863 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Cers2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365801,192,843 - 1,201,863 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CERS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1150,960,583 - 150,975,004 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1150,960,583 - 150,975,003 (-)EnsemblGRCh38hg38GRCh38
GRCh381150,965,184 - 150,974,835 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371150,937,662 - 150,947,311 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371150,937,649 - 150,947,479 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361149,204,273 - 149,214,064 (-)NCBINCBI36hg18NCBI36
Celera1124,053,344 - 124,063,135 (-)NCBI
Cytogenetic Map1q21.3NCBI
HuRef1122,314,777 - 122,324,583 (-)NCBIHuRef
CHM1_11152,332,969 - 152,342,798 (-)NCBICHM1_1
Cers2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,222,077 - 95,230,910 (+)NCBIGRCm39mm39
GRCm38395,314,771 - 95,323,599 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,314,791 - 95,323,599 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,119,174 - 95,127,492 (+)NCBIGRCm37mm9NCBIm37
MGSCv36395,400,656 - 95,408,974 (+)NCBImm8
Celera396,746,553 - 96,754,871 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
Cers2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22182,890,527 - 182,898,805 (+)NCBI
Rnor_6.0 Ensembl2196,487,656 - 196,496,986 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02196,487,656 - 196,495,930 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02215,986,084 - 215,994,362 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,224,017 - 190,232,275 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12190,186,196 - 190,195,027 (+)NCBI
Celera2175,424,025 - 175,432,283 (+)NCBICelera
Cytogenetic Map2q34NCBI
Cers2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955588336,083 - 342,599 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955588338,381 - 342,139 (-)NCBIChiLan1.0ChiLan1.0
CERS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11129,962,894 - 129,973,074 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,962,022 - 129,972,722 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01126,314,483 - 126,324,312 (-)NCBIMhudiblu_PPA_v0panPan3
CERS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1760,070,585 - 60,081,502 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11760,069,723 - 60,073,622 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CERS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,250,490 - 98,260,495 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,250,773 - 98,260,504 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,504,661 - 107,514,743 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CERS2
(Chlorocebus sabaeus - African green monkey)
No map positions available.
Cers2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477218,851,681 - 18,855,267 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005331183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGTP01066232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005331183   ⟹   XP_005331240
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365801,192,843 - 1,201,863 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005331240 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005331240   ⟸   XM_005331183
- UniProtKB: I3M8K5 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Homeobox   TLC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006797 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000006084 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006805 ENTREZGENE, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Lag1/Lac1-like UniProtKB/TrEMBL
  TLC-dom UniProtKB/TrEMBL
NCBI Gene Cers2 ENTREZGENE
PANTHER PTHR12560 UniProtKB/TrEMBL
Pfam Homeobox UniProtKB/TrEMBL
  TRAM_LAG1_CLN8 UniProtKB/TrEMBL
PIRSF LAG1_LAC1 UniProtKB/TrEMBL
PROSITE HOMEOBOX_2 UniProtKB/TrEMBL
  TLC UniProtKB/TrEMBL
SMART TLC UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt I3M8K5 ENTREZGENE, UniProtKB/TrEMBL