Col19a1 (collagen type XIX alpha 1 chain) - Rat Genome Database

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Gene: Col19a1 (collagen type XIX alpha 1 chain) Ictidomys tridecemlineatus
Analyze
Symbol: Col19a1
Name: collagen type XIX alpha 1 chain
RGD ID: 12626962
Description: INVOLVED IN extracellular matrix organization (ortholog); skeletal muscle tissue development (ortholog); ASSOCIATED WITH genetic disease (ortholog); methylmalonic aciduria and homocystinuria type cblF (ortholog); Parkinson's disease (ortholog); FOUND IN collagen trimer (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: collagen alpha-1(XIX) chain
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494667,699,359 - 68,012,743 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366181,868,564 - 2,165,131 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366181,856,473 - 2,169,869 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
Col19a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494667,699,359 - 68,012,743 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366181,868,564 - 2,165,131 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366181,856,473 - 2,169,869 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL19A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38669,866,556 - 70,212,468 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl669,866,556 - 70,212,468 (+)EnsemblGRCh38hg38GRCh38
GRCh37670,576,448 - 70,922,171 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36670,633,169 - 70,978,878 (+)NCBINCBI36Build 36hg18NCBI36
Build 34670,633,168 - 70,978,881NCBI
Celera670,964,842 - 71,310,558 (+)NCBICelera
Cytogenetic Map6q13NCBI
HuRef667,767,231 - 67,800,831 (+)NCBIHuRef
HuRef667,828,725 - 68,120,497 (+)NCBIHuRef
CHM1_1670,742,652 - 71,088,489 (+)NCBICHM1_1
T2T-CHM13v2.0671,046,687 - 71,393,027 (+)NCBIT2T-CHM13v2.0
Col19a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39124,296,764 - 24,627,870 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl124,300,971 - 24,626,553 (-)EnsemblGRCm39 Ensembl
GRCm38124,257,683 - 24,587,922 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl124,261,890 - 24,587,472 (-)EnsemblGRCm38mm10GRCm38
MGSCv37124,264,522 - 24,594,276 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36124,218,269 - 24,541,686 (-)NCBIMGSCv36mm8
Celera124,095,365 - 24,420,936 (-)NCBICelera
Cytogenetic Map1A5NCBI
cM Map19.99NCBI
Col19a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8934,170,248 - 34,518,478 (-)NCBIGRCr8
mRatBN7.2926,673,916 - 27,022,139 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl926,675,391 - 27,022,106 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0930,508,003 - 30,864,836 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl930,515,089 - 30,844,199 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0929,332,121 - 29,688,495 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4923,003,618 - 23,337,800 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1923,005,031 - 23,339,214 (-)NCBI
Celera924,210,032 - 24,556,238 (-)NCBICelera
Cytogenetic Map9q21NCBI
Col19a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554884,984,159 - 5,287,718 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554884,984,140 - 5,288,530 (+)NCBIChiLan1.0ChiLan1.0
COL19A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2589,861,289 - 90,203,405 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1687,786,825 - 88,128,613 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0667,706,969 - 68,049,323 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1671,006,284 - 71,347,042 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl671,006,284 - 71,340,612 (+)Ensemblpanpan1.1panPan2
COL19A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11232,452,653 - 32,760,310 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1232,449,744 - 32,755,226 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1232,311,174 - 32,621,347 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01232,993,435 - 33,301,702 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1232,993,700 - 33,297,058 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11232,510,019 - 32,832,632 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01232,563,653 - 32,874,023 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01232,676,371 - 32,986,509 (+)NCBIUU_Cfam_GSD_1.0
COL19A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl150,045,065 - 50,399,969 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1150,044,394 - 50,402,256 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2156,204,150 - 56,562,463 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COL19A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1174,769,466 - 5,096,036 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605810,782,130 - 11,117,453 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col19a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248199,673,233 - 9,996,628 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248199,668,052 - 10,023,511 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000008193   ⟹   ENSSTOP00000007336
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366181,868,564 - 2,165,131 (+)Ensembl
RefSeq Acc Id: XM_040282031   ⟹   XP_040137965
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494667,699,359 - 68,012,743 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040137965 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007336.3
GenBank Protein KAG3289719 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040137965   ⟸   XM_040282031
- UniProtKB: I3MB68 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000007336   ⟸   ENSSTOT00000008193
Protein Domains
Thrombospondin-like N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008137 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008193.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  TSPN-like_N UniProtKB/TrEMBL
NCBI Gene Col19a1 ENTREZGENE
PANTHER COLLAGEN ALPHA-1(XXV) CHAIN UniProtKB/TrEMBL
  SI:CH211-266K2.1 UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
SMART TSPN UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt I3MB68 ENTREZGENE, UniProtKB/TrEMBL