Ca1 (carbonic anhydrase 1) - Rat Genome Database

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Gene: Ca1 (carbonic anhydrase 1) Ictidomys tridecemlineatus
Analyze
Symbol: Ca1
Name: carbonic anhydrase 1
RGD ID: 12626743
Description: ENCODES a protein that exhibits arylesterase activity (ortholog); carbonate dehydratase activity (ortholog); hydro-lyase activity (ortholog); PARTICIPATES IN cimetidine pharmacodynamics pathway; esomeprazole pharmacodynamics pathway; famotidine pharmacodynamics pathway; ASSOCIATED WITH adenocarcinoma (ortholog); esophagus squamous cell carcinoma (ortholog); inherited metabolic disorder (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530347,504,905 - 47,545,941 (+)NCBI
SpeTri2.0NW_004936544246,797 - 257,798 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Ca1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530347,504,905 - 47,545,941 (+)NCBI
SpeTri2.0NW_004936544246,797 - 257,798 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl885,327,608 - 85,379,014 (-)EnsemblGRCh38hg38GRCh38
GRCh38885,327,608 - 85,378,113 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37886,239,837 - 86,290,342 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36886,427,709 - 86,477,594 (-)NCBINCBI36hg18NCBI36
Build 34886,427,708 - 86,477,594NCBI
Celera882,245,509 - 82,295,378 (-)NCBI
Cytogenetic Map8q21.2NCBI
HuRef881,734,656 - 81,784,498 (-)NCBIHuRef
CHM1_1886,292,190 - 86,342,064 (-)NCBICHM1_1
Car1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39314,831,274 - 14,873,425 (-)NCBIGRCm39mm39
GRCm39 Ensembl314,831,276 - 14,873,428 (-)Ensembl
GRCm38314,766,214 - 14,808,365 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl314,766,216 - 14,808,368 (-)EnsemblGRCm38mm10GRCm38
MGSCv37314,766,214 - 14,808,365 (-)NCBIGRCm37mm9NCBIm37
MGSCv36314,742,975 - 14,767,557 (-)NCBImm8
Celera314,771,712 - 14,813,913 (-)NCBICelera
Cytogenetic Map3A1NCBI
cM Map33.18NCBI
Car1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2286,829,436 - 86,872,209 (+)NCBI
Rnor_6.0 Ensembl288,217,188 - 88,227,479 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0288,185,204 - 88,227,486 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02107,958,483 - 108,000,765 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4288,166,412 - 88,210,693 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1288,143,727 - 88,155,654 (+)NCBI
Celera282,427,032 - 82,469,698 (+)NCBICelera
Cytogenetic Map2q23NCBI
Ca1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554173,270,619 - 3,305,756 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554173,270,619 - 3,313,261 (-)NCBIChiLan1.0ChiLan1.0
CA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1883,464,680 - 83,515,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl883,463,434 - 83,526,899 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0881,854,390 - 81,905,728 (-)NCBIMhudiblu_PPA_v0panPan3
CA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12931,858,644 - 31,868,135 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2931,858,636 - 31,868,158 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2932,144,441 - 32,154,240 (-)NCBI
ROS_Cfam_1.02932,007,771 - 32,017,260 (-)NCBI
UMICH_Zoey_3.12932,058,957 - 32,068,728 (-)NCBI
UNSW_CanFamBas_1.02932,080,387 - 32,089,882 (-)NCBI
UU_Cfam_GSD_1.02932,466,958 - 32,476,446 (-)NCBI
CA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl451,302,406 - 51,353,127 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1451,343,548 - 51,353,127 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2456,358,354 - 56,367,895 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CA1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1880,699,114 - 80,729,932 (-)NCBI
ChlSab1.1 Ensembl880,699,651 - 80,712,858 (-)Ensembl
Ca1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247446,244,872 - 6,324,722 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005328626   ⟹   XP_005328683
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_004936544246,797 - 257,798 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013360102   ⟹   XP_013215556
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_004936544246,797 - 257,649 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040293388   ⟹   XP_040149322
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530347,504,905 - 47,545,941 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040149322 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005328683   ⟸   XM_005328626
- Sequence:
RefSeq Acc Id: XP_013215556   ⟸   XM_013360102
- Sequence:
RefSeq Acc Id: XP_040149322   ⟸   XM_040293388
Protein Domains
Alpha-carbonic anhydrase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013359 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000011971 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013361 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro Carbonic_anhydrase_a UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_a_sf UniProtKB/TrEMBL
  Carbonic_anhydrase_CA1 UniProtKB/TrEMBL
NCBI Gene Ca1 ENTREZGENE
PANTHER PTHR18952 UniProtKB/TrEMBL
  PTHR18952:SF82 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt I3MKV0_ICTTR UniProtKB/TrEMBL