Pdia4 (protein disulfide isomerase family A member 4) - Rat Genome Database

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Gene: Pdia4 (protein disulfide isomerase family A member 4) Ictidomys tridecemlineatus
Analyze
Symbol: Pdia4
Name: protein disulfide isomerase family A member 4
RGD ID: 12625978
Description: ENCODES a protein that exhibits integrin binding (ortholog); protein disulfide isomerase activity (ortholog); INVOLVED IN blood coagulation, fibrin clot formation (ortholog); chaperone-mediated protein folding (ortholog); platelet aggregation (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN endoplasmic reticulum chaperone complex (ortholog); smooth endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051187,692,798 - 7,714,242 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365275,188,463 - 5,210,629 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365275,189,189 - 5,210,621 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pdia4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051187,692,798 - 7,714,242 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365275,188,463 - 5,210,629 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365275,189,189 - 5,210,621 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDIA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387149,003,051 - 149,028,505 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7149,003,062 - 149,028,662 (-)EnsemblGRCh38hg38GRCh38
GRCh377148,700,143 - 148,725,597 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367148,331,087 - 148,356,715 (-)NCBINCBI36Build 36hg18NCBI36
Celera7143,370,993 - 143,396,607 (-)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7142,778,950 - 142,804,531 (-)NCBIHuRef
CHM1_17148,708,552 - 148,734,184 (-)NCBICHM1_1
T2T-CHM13v2.07150,185,192 - 150,210,630 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27148,038,519 - 148,064,131 (-)NCBI
Pdia4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39647,773,075 - 47,790,446 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl647,773,075 - 47,790,364 (-)EnsemblGRCm39 Ensembl
GRCm38647,796,141 - 47,813,512 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl647,796,141 - 47,813,430 (-)EnsemblGRCm38mm10GRCm38
MGSCv37647,746,140 - 47,763,511 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36647,725,727 - 47,743,098 (-)NCBIMGSCv36mm8
Celera648,328,916 - 48,346,203 (-)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map622.94NCBI
Pdia4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8478,134,144 - 78,153,191 (-)NCBIGRCr8
mRatBN7.2476,803,198 - 76,822,245 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl476,803,198 - 76,822,107 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx482,015,477 - 82,034,526 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0477,789,815 - 77,808,864 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0476,231,277 - 76,250,326 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0477,470,636 - 77,489,535 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl477,470,636 - 77,489,535 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04142,140,946 - 142,159,845 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4475,929,398 - 75,948,299 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1476,205,527 - 76,224,429 (-)NCBI
Celera471,752,429 - 71,771,331 (-)NCBICelera
Cytogenetic Map4q24NCBI
Pdia4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554914,344,874 - 4,360,205 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554914,344,874 - 4,360,205 (-)NCBIChiLan1.0ChiLan1.0
PDIA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26185,587,296 - 185,613,588 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1737,597,560 - 37,623,852 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07140,731,333 - 140,757,599 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17153,210,542 - 153,236,721 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7153,210,553 - 153,236,721 (-)Ensemblpanpan1.1panPan2
PDIA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1161,797,537 - 1,818,877 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl161,797,552 - 1,818,251 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha162,896,760 - 2,918,061 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0161,601,971 - 1,623,305 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1161,588,802 - 1,610,117 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0161,448,287 - 1,469,581 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0161,452,161 - 1,473,485 (+)NCBIUU_Cfam_GSD_1.0
PDIA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9109,252,011 - 109,280,247 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19109,260,850 - 109,280,256 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29120,198,256 - 120,217,661 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PDIA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121117,574,932 - 117,601,896 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21117,574,427 - 117,601,960 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607213,525,893 - 13,553,262 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdia4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248006,723,548 - 6,742,024 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248006,723,567 - 6,742,024 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000022811   ⟹   ENSSTOP00000022180
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365275,188,463 - 5,210,629 (-)Ensembl
RefSeq Acc Id: XM_005326636   ⟹   XP_005326693
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244051187,692,800 - 7,714,242 (+)NCBI
SpeTri2.0NW_0049365275,189,189 - 5,210,621 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040291297   ⟹   XP_040147231
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244051187,692,798 - 7,714,242 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005326693 (Get FASTA)   NCBI Sequence Viewer  
  XP_040147231 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000022180.1
GenBank Protein KAG3277271 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005326693   ⟸   XM_005326636
- Peptide Label: isoform X1
- UniProtKB: I3NCT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040147231   ⟸   XM_040291297
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000022180   ⟸   ENSSTOT00000022811
Protein Domains
Thioredoxin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023701 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022811.2 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro Disulphide_isomerase UniProtKB/TrEMBL
  PDIA4_PDI_b UniProtKB/TrEMBL
  Prot_disulphide_isomerase UniProtKB/TrEMBL
  Protein_diS-isomerase_A4 UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
  Thioredoxin_CS UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/TrEMBL
NCBI Gene Pdia4 ENTREZGENE
PANTHER PROTEIN DISULFIDE ISOMERASE UniProtKB/TrEMBL
  PROTEIN DISULFIDE-ISOMERASE A4 UniProtKB/TrEMBL
Pfam Thioredoxin UniProtKB/TrEMBL
  Thioredoxin_6 UniProtKB/TrEMBL
PIRSF Disulphide_isom_A4 UniProtKB/TrEMBL
PRINTS THIOREDOXIN UniProtKB/TrEMBL
PROSITE THIOREDOXIN_1 UniProtKB/TrEMBL
  THIOREDOXIN_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt I3NCT3 ENTREZGENE, UniProtKB/TrEMBL