Slc35e4 (solute carrier family 35 member E4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Slc35e4 (solute carrier family 35 member E4) Ictidomys tridecemlineatus
Analyze
Symbol: Slc35e4
Name: solute carrier family 35 member E4
RGD ID: 12625755
Description: ENCODES a protein that exhibits antiporter activity (inferred); INVOLVED IN transmembrane transport (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN Golgi apparatus (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118116,641,478 - 116,648,502 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493690485,727 - 92,070 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493690485,729 - 92,697 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slc35e4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118116,641,478 - 116,648,502 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493690485,727 - 92,070 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493690485,729 - 92,697 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35E4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382230,635,781 - 30,669,019 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2230,635,781 - 30,669,016 (+)EnsemblGRCh38hg38GRCh38
GRCh372231,031,768 - 31,065,006 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362229,361,793 - 29,373,862 (+)NCBINCBI36Build 36hg18NCBI36
Celera2214,831,889 - 14,843,953 (+)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2213,994,152 - 14,006,208 (+)NCBIHuRef
CHM1_12230,991,527 - 31,003,586 (+)NCBICHM1_1
T2T-CHM13v2.02231,097,725 - 31,132,558 (+)NCBIT2T-CHM13v2.0
Slc35e4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,857,022 - 3,864,664 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,857,021 - 3,864,664 (-)EnsemblGRCm39 Ensembl
GRCm38113,907,022 - 3,914,664 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,907,021 - 3,914,664 (-)EnsemblGRCm38mm10GRCm38
MGSCv37113,807,025 - 3,814,667 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,807,025 - 3,814,667 (-)NCBIMGSCv36mm8
Celera114,401,551 - 4,409,193 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.75NCBI
Slc35e4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,026,914 - 83,033,778 (-)NCBIGRCr8
mRatBN7.21478,803,320 - 78,810,186 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1478,803,323 - 78,810,241 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1483,244,360 - 83,251,224 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01484,484,442 - 84,491,306 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01480,930,049 - 80,936,871 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01484,163,971 - 84,170,835 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,163,972 - 84,170,835 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01484,847,696 - 84,854,560 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41484,569,021 - 84,575,885 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11484,588,166 - 84,595,026 (-)NCBI
Celera1477,715,330 - 77,722,194 (-)NCBICelera
Cytogenetic Map14q21NCBI
Slc35e4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554554,853,632 - 4,863,617 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554554,853,632 - 4,863,617 (+)NCBIChiLan1.0ChiLan1.0
SLC35E4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22340,591,679 - 40,605,285 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12243,292,349 - 43,322,567 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02211,660,947 - 11,720,447 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12229,462,404 - 29,520,761 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2229,462,404 - 29,475,749 (+)Ensemblpanpan1.1panPan2
SLC35E4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12623,714,960 - 23,720,977 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2623,715,105 - 23,720,444 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2623,585,328 - 23,591,712 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02624,098,852 - 24,105,237 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12623,800,265 - 23,806,650 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02624,062,897 - 24,069,280 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02624,123,483 - 24,129,869 (+)NCBIUU_Cfam_GSD_1.0
SLC35E4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1447,520,089 - 47,526,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11447,518,602 - 47,550,157 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21450,630,699 - 50,637,846 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35E4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11913,516,718 - 13,529,361 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1913,519,018 - 13,528,501 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045112,597,200 - 112,608,473 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc35e4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247476,992,931 - 7,002,037 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247476,992,939 - 7,002,037 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005341866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000013949   ⟹   ENSSTOP00000012500
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493690485,727 - 92,070 (-)Ensembl
RefSeq Acc Id: XM_005341866   ⟹   XP_005341923
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118116,641,478 - 116,648,502 (+)NCBI
SpeTri2.0NW_00493690485,729 - 92,697 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005341923 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012500.3
GenBank Protein KAG3278412 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005341923   ⟸   XM_005341866
- UniProtKB: I3MM00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000012500   ⟸   ENSSTOT00000013949
Protein Domains
Sugar phosphate transporter


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013955 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013949.3 UniProtKB/TrEMBL
InterPro Sugar_P_trans_dom UniProtKB/TrEMBL
NCBI Gene Slc35e4 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 35 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 35 MEMBER E4 UniProtKB/TrEMBL
Pfam TPT UniProtKB/TrEMBL
Superfamily-SCOP Multidrug resistance efflux transporter EmrE UniProtKB/TrEMBL
UniProt I3MM00 ENTREZGENE, UniProtKB/TrEMBL