Rdx (radixin) - Rat Genome Database

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Gene: Rdx (radixin) Ictidomys tridecemlineatus
Analyze
Symbol: Rdx
Name: radixin
RGD ID: 12625737
Description: ENCODES a protein that exhibits actin binding (ortholog); protein domain specific binding (ortholog); protein kinase A binding (ortholog); INVOLVED IN apical protein localization (ortholog); barbed-end actin filament capping (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 24 (ortholog); FOUND IN adherens junction (ortholog); apical part of cell (ortholog); cell tip (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494792,645,011 - 92,713,067 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366123,992,542 - 4,040,315 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366123,992,542 - 4,060,598 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rdx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494792,645,011 - 92,713,067 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366123,992,542 - 4,040,315 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366123,992,542 - 4,060,598 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RDX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811110,174,922 - 110,296,614 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11109,864,295 - 110,296,712 (-)EnsemblGRCh38hg38GRCh38
GRCh3711110,045,647 - 110,167,339 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611109,605,376 - 109,672,647 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411109,605,381 - 109,655,644NCBI
Celera11107,253,634 - 107,320,905 (-)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11105,970,010 - 106,091,683 (-)NCBIHuRef
CHM1_111109,928,800 - 110,050,624 (-)NCBICHM1_1
T2T-CHM13v2.011110,184,743 - 110,306,806 (-)NCBIT2T-CHM13v2.0
Rdx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39951,958,450 - 52,000,038 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl951,958,473 - 52,011,763 (+)EnsemblGRCm39 Ensembl
GRCm38952,047,150 - 52,088,738 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl952,047,173 - 52,100,463 (+)EnsemblGRCm38mm10GRCm38
MGSCv37951,855,255 - 51,896,843 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36951,800,692 - 51,841,101 (+)NCBIMGSCv36mm8
Celera949,323,161 - 49,364,735 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map928.62NCBI
Rdx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8861,275,792 - 61,348,260 (+)NCBIGRCr8
mRatBN7.2852,379,494 - 52,437,673 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl852,379,494 - 52,437,678 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx857,928,308 - 57,971,180 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0856,207,282 - 56,250,158 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0854,071,527 - 54,114,400 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0856,570,728 - 56,612,851 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl856,585,396 - 56,610,612 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0855,152,377 - 55,194,097 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4855,404,000 - 55,450,183 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1855,423,053 - 55,469,236 (+)NCBI
Celera851,903,656 - 51,946,436 (+)NCBICelera
Cytogenetic Map8q24NCBI
Rdx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541212,100,359 - 12,172,545 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541212,100,436 - 12,184,444 (-)NCBIChiLan1.0ChiLan1.0
RDX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29110,909,905 - 111,019,235 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111112,003,902 - 112,130,151 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011105,075,716 - 105,176,660 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111108,921,477 - 109,005,557 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11108,921,477 - 109,005,557 (-)Ensemblpanpan1.1panPan2
RDX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1522,555,913 - 22,642,822 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl522,571,286 - 22,642,811 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha522,474,394 - 22,561,935 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0522,581,249 - 22,668,985 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl522,581,164 - 22,668,972 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1522,639,826 - 22,727,131 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0522,539,744 - 22,627,628 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0522,589,215 - 22,677,042 (+)NCBIUU_Cfam_GSD_1.0
RDX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl938,220,447 - 38,322,097 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1938,243,608 - 38,299,561 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2942,953,206 - 43,009,694 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RDX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11101,554,640 - 101,647,765 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1101,554,334 - 101,623,093 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604324,300,763 - 24,397,097 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rdx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247845,221,045 - 5,271,045 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247845,198,433 - 5,304,953 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000003688   ⟹   ENSSTOP00000003301
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366123,992,542 - 4,040,315 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000028005   ⟹   ENSSTOP00000017513
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366123,992,606 - 4,040,315 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000030071   ⟹   ENSSTOP00000023015
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366123,999,820 - 4,025,028 (+)Ensembl
RefSeq Acc Id: XM_040285174   ⟹   XP_040141108
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494792,645,011 - 92,713,067 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040141108 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003301.3
  ENSSTOP00000017513.2
  ENSSTOP00000023015.2
GenBank Protein KAG3286495 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040141108   ⟸   XM_040285174
- UniProtKB: I3M2R8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000023015   ⟸   ENSSTOT00000030071
Ensembl Acc Id: ENSSTOP00000017513   ⟸   ENSSTOT00000028005
Ensembl Acc Id: ENSSTOP00000003301   ⟸   ENSSTOT00000003688
Protein Domains
FERM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003670 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003688.3 UniProtKB/TrEMBL
  ENSSTOT00000028005.2 UniProtKB/TrEMBL
  ENSSTOT00000030071.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.450 UniProtKB/TrEMBL
  1.20.80.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  6.10.360.10 UniProtKB/TrEMBL
InterPro Band_41_domain UniProtKB/TrEMBL
  ERM UniProtKB/TrEMBL
  ERM_C_dom UniProtKB/TrEMBL
  ERM_FERM_C UniProtKB/TrEMBL
  ERM_helical UniProtKB/TrEMBL
  Ez/rad/moesin-like UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_sf UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_CS UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/TrEMBL
  Moesin_tail_sf UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Rdx ENTREZGENE
PANTHER PTHR23281 UniProtKB/TrEMBL
  RADIXIN UniProtKB/TrEMBL
Pfam ERM_C UniProtKB/TrEMBL
  ERM_helical UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  FERM_M UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
PIRSF ERM UniProtKB/TrEMBL
PRINTS BAND41 UniProtKB/TrEMBL
  ERMFAMILY UniProtKB/TrEMBL
PROSITE FERM_1 UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_3 UniProtKB/TrEMBL
SMART B41 UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF47031 UniProtKB/TrEMBL
  SSF48678 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt I3M2R8 ENTREZGENE, UniProtKB/TrEMBL
  I3MZG7_ICTTR UniProtKB/TrEMBL
  I3NF68_ICTTR UniProtKB/TrEMBL