LOC101970535 (olfactory receptor 52Z1) - Rat Genome Database

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Pathways
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Gene: LOC101970535 (olfactory receptor 52Z1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101970535
Name: olfactory receptor 52Z1
RGD ID: 12625153
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: olfactory receptor 52Z1-like
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494757,958,493 - 57,959,464 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936961419,458 - 420,429 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC101970535
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494757,958,493 - 57,959,464 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936961419,458 - 420,429 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OR52Z1P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,177,714 - 5,178,664 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,177,714 - 5,178,664 (-)EnsemblGRCh38hg38GRCh38
GRCh37115,198,944 - 5,199,894 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,155,426 - 5,156,516 (-)NCBINCBI36Build 36hg18NCBI36
Celera115,317,607 - 5,318,502 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef114,858,112 - 4,859,007 (-)NCBIHuRef
CHM1_1115,197,840 - 5,198,730 (-)NCBICHM1_1
T2T-CHM13v2.0115,237,038 - 5,237,993 (-)NCBIT2T-CHM13v2.0
Or52z1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397103,436,419 - 103,441,037 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7103,433,801 - 103,441,028 (-)EnsemblGRCm39 Ensembl
GRCm387103,787,212 - 103,791,830 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7103,784,594 - 103,791,821 (-)EnsemblGRCm38mm10GRCm38
MGSCv377110,935,726 - 110,940,344 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367103,661,033 - 103,665,651 (-)NCBIMGSCv36mm8
Celera7104,160,394 - 104,165,043 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map754.85NCBI
Or52z1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81167,618,174 - 167,619,136 (-)NCBIGRCr8
mRatBN7.21158,206,284 - 158,207,246 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1166,204,302 - 166,205,264 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01173,384,319 - 173,385,281 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01166,272,517 - 166,273,479 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01168,929,814 - 168,930,776 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1168,929,814 - 168,930,776 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,087,438 - 175,088,400 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41161,566,055 - 161,567,017 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11161,647,344 - 161,648,307 (-)NCBI
Celera1156,244,962 - 156,245,924 (-)NCBICelera
Cytogenetic Map1q32NCBI
OR52Z1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12128,121,480 - 28,123,831 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2127,862,159 - 27,863,130 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02128,839,957 - 28,840,928 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12128,178,709 - 28,179,680 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02128,408,138 - 28,409,109 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02128,546,976 - 28,547,947 (-)NCBIUU_Cfam_GSD_1.0
LOC100520088
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.194,780,864 - 4,782,368 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.295,613,304 - 5,614,266 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OR52Z1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1161,519,613 - 61,520,910 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604364,432,776 - 64,433,862 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005342111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005342111   ⟹   XP_005342168
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494757,958,493 - 57,959,464 (+)NCBI
SpeTri2.0NW_004936961419,458 - 420,429 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005342168 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016706.2
GenBank Protein KAG3285935 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005342168   ⟸   XM_005342111
- UniProtKB: I3MX61 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000029040 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028128.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC101970535 ENTREZGENE
PANTHER OLFACTORY RECEPTOR 52Z1 UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 56B1-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt I3MX61 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101970535  olfactory receptor 52Z1  LOC101970535  olfactory receptor 52Z1-like  Symbol and/or name change 5135510 APPROVED