Dlec1 (DLEC1 cilia and flagella associated protein) - Rat Genome Database

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Gene: Dlec1 (DLEC1 cilia and flagella associated protein) Ictidomys tridecemlineatus
Analyze
Symbol: Dlec1
Name: DLEC1 cilia and flagella associated protein
RGD ID: 12624781
Description: ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN defense response to tumor cell (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Brugada syndrome (ortholog); esophageal cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: deleted in lung and esophageal cancer 1; deleted in lung and esophageal cancer protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118194,256,540 - 194,315,269 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647327,395,220 - 27,444,618 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Dlec1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118194,256,540 - 194,315,269 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647327,395,220 - 27,444,618 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DLEC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38338,039,208 - 38,124,025 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl338,039,205 - 38,124,025 (+)EnsemblGRCh38hg38GRCh38
GRCh37338,080,699 - 38,165,516 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36338,055,700 - 38,139,232 (+)NCBINCBI36Build 36hg18NCBI36
Celera338,015,107 - 38,100,029 (+)NCBICelera
Cytogenetic Map3p22.2NCBI
HuRef338,023,406 - 38,205,190 (+)NCBIHuRef
CHM1_1338,032,364 - 38,116,208 (+)NCBICHM1_1
T2T-CHM13v2.0338,043,402 - 38,129,694 (+)NCBIT2T-CHM13v2.0
Dlec1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399118,927,720 - 118,977,314 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9118,931,546 - 118,977,314 (+)EnsemblGRCm39 Ensembl
GRCm389119,102,444 - 119,148,246 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9119,102,478 - 119,148,246 (+)EnsemblGRCm38mm10GRCm38
MGSCv379119,011,596 - 119,056,812 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369118,951,176 - 118,996,392 (+)NCBIMGSCv36mm8
Celera9119,570,363 - 119,615,580 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map971.32NCBI
Dlec1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88127,704,181 - 127,750,929 (+)NCBIGRCr8
mRatBN7.28118,826,429 - 118,873,183 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8118,826,466 - 118,873,655 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.08127,788,919 - 127,835,986 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8127,789,048 - 127,834,637 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08126,998,513 - 127,044,430 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48124,063,286 - 124,109,689 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8117,999,323 - 118,046,957 (+)NCBICelera
Cytogenetic Map8q32NCBI
Dlec1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554214,888,888 - 4,957,327 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554214,889,860 - 4,957,787 (+)NCBIChiLan1.0ChiLan1.0
DLEC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2237,992,906 - 38,075,946 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1337,997,730 - 38,080,715 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0337,937,566 - 38,020,662 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1338,221,260 - 38,303,002 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl338,221,275 - 38,303,194 (+)Ensemblpanpan1.1panPan2
DLEC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1237,813,305 - 7,889,322 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl237,813,546 - 7,889,324 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha237,855,221 - 7,936,019 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0238,102,388 - 8,178,877 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl238,102,608 - 8,178,879 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1237,913,080 - 7,997,532 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0238,058,096 - 8,138,664 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0238,050,287 - 8,130,925 (+)NCBIUU_Cfam_GSD_1.0
DLEC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1322,882,629 - 22,964,677 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11322,873,210 - 22,964,971 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21325,072,011 - 25,168,703 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DLEC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1151,297,129 - 1,364,134 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl151,296,204 - 1,363,806 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606310,026,687 - 10,094,490 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dlec1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477320,031,294 - 20,092,420 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477320,029,419 - 20,089,205 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013361243   ⟹   XP_013216697
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118194,256,607 - 194,306,014 (+)NCBI
SpeTri2.0NW_00493647327,395,220 - 27,444,618 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040290013   ⟹   XP_040145947
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118194,256,606 - 194,306,014 (+)NCBI
RefSeq Acc Id: XM_040290014   ⟹   XP_040145948
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118194,260,699 - 194,306,014 (+)NCBI
RefSeq Acc Id: XM_040290015   ⟹   XP_040145949
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118194,256,540 - 194,306,014 (+)NCBI
RefSeq Acc Id: XR_005735853
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118194,256,607 - 194,312,609 (+)NCBI
RefSeq Acc Id: XR_005735854
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118194,256,607 - 194,315,269 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013216697 (Get FASTA)   NCBI Sequence Viewer  
  XP_040145947 (Get FASTA)   NCBI Sequence Viewer  
  XP_040145948 (Get FASTA)   NCBI Sequence Viewer  
  XP_040145949 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3279625 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013216697   ⟸   XM_013361243
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040145949   ⟸   XM_040290015
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040145947   ⟸   XM_040290013
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040145948   ⟸   XM_040290014
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
NCBI Gene Dlec1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 Dlec1  DLEC1 cilia and flagella associated protein    DLEC1, cilia and flagella associated protein  Symbol and/or name change 5135510 APPROVED
2018-05-15 Dlec1  DLEC1, cilia and flagella associated protein    deleted in lung and esophageal cancer 1  Symbol and/or name change 5135510 APPROVED