Tmem185b (transmembrane protein 185B) - Rat Genome Database

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Gene: Tmem185b (transmembrane protein 185B) Ictidomys tridecemlineatus
Analyze
Symbol: Tmem185b
Name: transmembrane protein 185B
RGD ID: 12623313
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530391,308,751 - 91,314,210 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646950,303,976 - 50,305,028 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646950,303,513 - 50,306,321 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Comparative Map Data
Tmem185b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530391,308,751 - 91,314,210 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646950,303,976 - 50,305,028 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646950,303,513 - 50,306,321 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM185B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382120,217,479 - 120,223,400 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2120,217,479 - 120,223,400 (-)EnsemblGRCh38hg38GRCh38
GRCh372120,975,055 - 120,980,976 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362120,695,324 - 120,697,454 (-)NCBINCBI36Build 36hg18NCBI36
Celera2114,305,701 - 114,307,831 (-)NCBICelera
Cytogenetic Map2q14.2NCBI
HuRef2113,298,822 - 113,304,759 (-)NCBIHuRef
CHM1_12120,979,441 - 120,985,378 (-)NCBICHM1_1
T2T-CHM13v2.02120,652,239 - 120,658,160 (-)NCBIT2T-CHM13v2.0
Tmem185b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391119,453,884 - 119,456,713 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1119,453,890 - 119,456,713 (+)EnsemblGRCm39 Ensembl
GRCm381119,526,154 - 119,528,983 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1119,526,160 - 119,528,983 (+)EnsemblGRCm38mm10GRCm38
MGSCv371121,422,744 - 121,424,803 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361121,353,713 - 121,355,772 (+)NCBIMGSCv36mm8
Celera1122,184,964 - 122,187,094 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.31NCBI
Tmem185b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81333,200,329 - 33,203,660 (+)NCBIGRCr8
mRatBN7.21330,647,533 - 30,650,864 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1330,647,482 - 30,650,858 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1333,228,893 - 33,232,226 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01334,516,732 - 34,520,065 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01331,790,854 - 31,794,186 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01335,554,621 - 35,557,952 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1335,554,964 - 35,556,016 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01340,669,220 - 40,672,564 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41332,276,974 - 32,279,005 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11332,280,108 - 32,281,829 (+)NCBI
Celera1330,543,175 - 30,546,506 (+)NCBICelera
Cytogenetic Map13q11NCBI
Tmem185b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554599,610,905 - 9,613,405 (+)NCBIChiLan1.0ChiLan1.0
TMEM185B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21322,219,290 - 22,225,355 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B22,238,267 - 22,240,349 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B7,149,925 - 7,155,857 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B120,725,913 - 120,731,687 (-)NCBIpanpan1.1PanPan1.1panPan2
TMEM185B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11929,892,735 - 29,894,526 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1930,149,219 - 30,151,009 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01931,268,313 - 31,270,107 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1931,268,280 - 31,270,103 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11929,954,584 - 29,956,373 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01930,123,872 - 30,125,662 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01931,309,974 - 31,311,768 (+)NCBIUU_Cfam_GSD_1.0
TMEM185B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1531,141,126 - 31,142,181 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11531,140,283 - 31,146,656 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21536,617,474 - 36,619,775 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM185B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11010,068,817 - 10,070,996 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1010,069,244 - 10,070,296 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606112,616,649 - 12,619,722 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem185b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473224,869,529 - 24,872,583 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005315910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000029432   ⟹   ENSSTOP00000015766
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493646950,303,976 - 50,305,028 (+)Ensembl
RefSeq Acc Id: XM_005315910   ⟹   XP_005315967
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530391,308,751 - 91,314,210 (-)NCBI
SpeTri2.0NW_00493646950,303,513 - 50,306,321 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005315967 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015766.1
GenBank Protein KAG3274264 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005315967   ⟸   XM_005315910
- UniProtKB: I3MUH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000015766   ⟸   ENSSTOT00000029432


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020073 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029432.2 UniProtKB/TrEMBL
InterPro TM_Fragile-X-F-assoc UniProtKB/TrEMBL
NCBI Gene Tmem185b ENTREZGENE
PANTHER PTHR13568 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 185B UniProtKB/TrEMBL
Pfam Tmemb_185A UniProtKB/TrEMBL
UniProt I3MUH1 ENTREZGENE, UniProtKB/TrEMBL