Advanced Search (OLGA)

Gene: Trmt61a (tRNA methyltransferase 61A) Ictidomys tridecemlineatus

Analyze

Symbol:

Trmt61a

Name:

tRNA methyltransferase 61A

RGD ID:

12621590

Description:

ENCODES a protein that exhibits methyltransferase activity (inferred); mRNA (adenine-N1-)-methyltransferase activity (inferred); transferase activity (inferred); INVOLVED IN methylation (inferred); mRNA processing (inferred); tRNA methylation (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); Cornelia de Lange syndrome (ortholog); immunodeficiency 132A (ortholog); FOUND IN nucleus (inferred); tRNA (m1A) methyltransferase complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; tRNA methyltransferase 61 homolog A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	2,771,284 - 2,783,809 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936621	1,599,309 - 1,606,939 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936621	1,600,241 - 1,607,039 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease axonal type 2O (ISO)

Cornelia de Lange syndrome (ISO)

immunodeficiency 132A (ISO)

mitochondrial complex IV deficiency nuclear type 17 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

methylation (IEA)

mRNA processing (IEA)

tRNA methylation (IEA)

tRNA processing (IEA)

Cellular Component

nucleus (IEA)

tRNA (m1A) methyltransferase complex (IEA)

Molecular Function

methyltransferase activity (IEA)

mRNA (adenine-N1-)-methyltransferase activity (IEA)

protein binding (ISO)

transferase activity (IEA)

tRNA (adenine(58)-N1)-methyltransferase activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Trmt61a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	2,771,284 - 2,783,809 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936621	1,599,309 - 1,606,939 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936621	1,600,241 - 1,607,039 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRMT61A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	103,529,196 - 103,537,073 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	103,529,196 - 103,537,073 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	103,995,533 - 104,003,410 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	103,065,262 - 103,073,163 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	103,065,261 - 103,072,135	NCBI
Celera	14	84,049,737 - 84,057,638 (+)	NCBI		Celera
Cytogenetic Map	14	q32.33	NCBI
HuRef	14	84,173,869 - 84,181,770 (+)	NCBI		HuRef
CHM1_1	14	103,933,703 - 103,941,603 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	97,765,240 - 97,773,117 (+)	NCBI		T2T-CHM13v2.0

Trmt61a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	111,644,539 - 111,650,336 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	111,644,539 - 111,650,336 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	111,678,105 - 111,683,902 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	111,678,105 - 111,683,902 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	112,916,316 - 112,922,113 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	112,125,951 - 112,131,708 (+)	NCBI		MGSCv36	mm8
Celera	12	116,252,156 - 116,255,241 (+)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI
cM Map	12	61.09	NCBI

Trmt61a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	136,558,417 - 136,564,411 (+)	NCBI		GRCr8
mRatBN7.2	6	130,737,230 - 130,743,251 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	130,737,219 - 130,743,243 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	130,904,351 - 130,910,340 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	131,200,333 - 131,206,322 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	130,567,314 - 130,573,306 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	136,150,768 - 136,156,785 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	136,150,785 - 136,250,752 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	144,259,958 - 144,265,948 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	136,460,061 - 136,466,051 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	136,466,247 - 136,472,238 (+)	NCBI
Celera	6	128,292,547 - 128,298,537 (+)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

Trmt61a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955538	2,383,666 - 2,396,402 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955538	2,383,666 - 2,393,667 (+)	NCBI	ChiLan1.0	ChiLan1.0

TRMT61A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	104,683,284 - 104,703,767 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	103,900,650 - 103,920,267 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	84,151,067 - 84,167,111 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	103,966,755 - 103,977,942 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	103,966,755 - 103,974,697 (+)	Ensembl	panpan1.1		panPan2

TRMT61A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	71,294,129 - 71,300,679 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	71,294,303 - 71,300,687 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	70,804,995 - 70,811,676 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	71,569,543 - 71,576,222 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	71,569,577 - 71,576,219 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	71,258,633 - 71,265,303 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	71,298,368 - 71,305,046 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	71,697,586 - 71,704,265 (+)	NCBI		UU_Cfam_GSD_1.0

TRMT61A
(Sus scrofa - pig)

No map positions available.

TRMT61A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	81,464,312 - 81,476,867 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666053	68,773,512 - 68,780,294 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trmt61a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	1,335,091 - 1,344,714 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	1,335,946 - 1,342,253 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005334666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013362542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021732767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021732768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000009787 ⟹ ENSSTOP00000008777

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936621	1,599,309 - 1,606,939 (-)	Ensembl

RefSeq Acc Id:

XM_005334666 ⟹ XP_005334723

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	2,771,284 - 2,783,809 (-)	NCBI
SpeTri2.0	NW_004936621	1,600,241 - 1,607,039 (-)	NCBI

Sequence:

show sequence

CGCGGCGCGACGTCATCCGCGCGCGCGGACGCCGGAAGTGCGATGTCGGCAGCTCTGCGCCGTA
GGCGCACGTGTGGAGCCAGGTCTAGCACTTGCAGACATCAACACAATGAGCTTCGTGGCCTATG
AAGAGCTGATCAAAGAGGGTGACACAGCCATCCTGTCACTGGGTCATGGCTCAATGGTGGCAGT
GCGTGTGCAGCGAGGGGCACAGACCCAGACCCGGCACGGTGTCTTGCGGCATTCAGTCGACCTC
ATTGGCCGTCCCTTTGGCTCCAAAGTGATCTGCAGCCGAGGTGGCTGGGTGTATGTGCTTCACC
CCACACCTGAGCTCTGGACTCTGAACTTACCACATCGCACACAAATCCTCTACTCCACTGACAT
CGCCCTGCTCACTATGATGCTGGAGCTGCGGCCTGGCTCTGTGGTCTGCGAGTCTGGCACTGGT
AGTGGTTCTGTGTCCCATGCCATCATCCGCAGCATTGCCCCCACAGGCCACCTGCACACAGTGG
AGTTTCATCAGCAGCGGGCAGACAAAGCCAGGGAGGAGTTCCAGGAGCATCGAGTGGGCCACTG
GGTGACAGTGCGCACCCAGGATGTGTGCCGCAGTGGCTTTGGTGTGAGCCACGTGGCTGATGCT
GTCTTCTTGGACATCCCATCACCCTGGGAGGCTGTGGGCCATGCCTGGGATGCCCTCAAGGTTG
AAGGTGGGCGTTTCTGTTCCTTCTCACCGTGCATTGAGCAGGTGCAGCGCACATGCCAGGCGCT
GGCAGCCCGCGGCTTCACGGAGCTGAGCACCCTGGAGGTGCTGCCACAGGTCTACAATGTGCGC
ACTGTCAGCCTGCCCCTGCCTGACCTAGGAGCCAACGACCCACAGGCCAGCACAGGCACTCCTG
CCAATCCTGACGCCAGCCCCTTCCGCAGCGGCACACCCATGAAGGAGGCTGTGGGCCACACAGG
CTACCTGACTTTCGCCACCAAGTCCCCAGGCTAACAGGTCCTGGGGGGAGCGCCAAGGAGCTGG
GAGCATCCTGGGGCAAGCAGGAAGGCCAGGGGCCACCTTTTATGGCAGTGGATGCCTGCTGGGG
TTTGTGTTTAGAAACAGATGGTGGGGCGGGGCTTGGGGCCTCCTGGGTGGCCAAAGGGGCAGGC
AAGGAGGGATGGCCATTATCATCATCTGTGGTAGGAGTACTTCTGCTCTCATCCCTGCCGAGCC
CAGGATCTGGTCTGACTGCTCTTTGTAGTCAGTGTGAAACCTCACTGCCATAGGTTCTCCTGGG
TGTTGAGGCTAAGGAGTGACAGGGTCTAACTCCTTTCTCAGGTGGACCTATGGGAGAAAGGGGT
GGAGGAGGGTCAGAGCTTGCAGTGTCTCATAGGGCTGGGGACCATCCCATCCCTGAGTCACTGG
TGGTCCTGGGGCTTGGCCAGAAGCCATGATGGAACTGACCTGGAGAATGCTGTCCTACCCTGCC
CATCTCTGCCTCTCCAGTTGCTGTGAGGACCGTGCTTACCTAGGATGCTGGGGCGGTGACCCTG
CTGTCTGGCCTCCAAATACCCAGGCCTCAGGTTTTCTCACATCCAGGGGCAGGATCTCCTGCCA
CCAACCCCCAGGAGGTTCATTCTGTAGCCCTGGCCCAGCCAGAGCCCTTTATGAGTTATCTTTG
GGGTCATGCCGCAGCCTGACCTGCAGAGGAATTGCCCAGTATGATGGTTATTTGCTTCTGGTGA
CCTGGTGGCTCCATGTAGGAGCCGGTGCAACCCCAAACCTCTGGTGACCGACCCTGGGCCTTCC
TTGGCTTGTGGAGGAGGTCCTCCATGGGGACAGTACTTCCAGTGGGGAGGAATCTCCAAAGAGG
GCACCTTTATCACCACCTCTGGAAGACTTAGGGCATGTTTCTCAAGGAGGGGGGGACATGAAGG
ATGAGTCACCAGGGCTTTAGTCCCTGGTGGTCACCCCAGTGCATGGACTTGGGCCTGTGTCTAA
CGCTGAGGCCACTGGTGCAGAGCTAGCCGTCAGAGCCTCAGGTGCCAAGCCAGCATGGCTGGCT
CCCATGTATAGCTAAACAATAAATGTGCTCTCCCGCTA

hide sequence

RefSeq Acc Id:

XM_021732767 ⟹ XP_021588442

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	2,771,284 - 2,778,080 (-)	NCBI
SpeTri2.0	NW_004936621	1,600,241 - 1,607,001 (-)	NCBI

Sequence:

show sequence

TGCGATGTCGGCAGCTCTGCGCCGTAGGCGCACGTGTGGAGCCAGGTACCGGGTGCGGCGGGTC
TAGCACTTGCAGACATCAACACAATGAGCTTCGTGGCCTATGAAGAGCTGATCAAAGAGGGTGA
CACAGCCATCCTGTCACTGGGTCATGGCTCAATGGTGGCAGTGCGTGTGCAGCGAGGGGCACAG
ACCCAGACCCGGCACGGTGTCTTGCGGCATTCAGTCGACCTCATTGGCCGTCCCTTTGGCTCCA
AAGTGATCTGCAGCCGAGGTGGCTGGGTGTATGTGCTTCACCCCACACCTGAGCTCTGGACTCT
GAACTTACCACATCGCACACAAATCCTCTACTCCACTGACATCGCCCTGCTCACTATGATGCTG
GAGCTGCGGCCTGGCTCTGTGGTCTGCGAGTCTGGCACTGGTAGTGGTTCTGTGTCCCATGCCA
TCATCCGCAGCATTGCCCCCACAGGCCACCTGCACACAGTGGAGTTTCATCAGCAGCGGGCAGA
CAAAGCCAGGGAGGAGTTCCAGGAGCATCGAGTGGGCCACTGGGTGACAGTGCGCACCCAGGAT
GTGTGCCGCAGTGGCTTTGGTGTGAGCCACGTGGCTGATGCTGTCTTCTTGGACATCCCATCAC
CCTGGGAGGCTGTGGGCCATGCCTGGGATGCCCTCAAGGTTGAAGGTGGGCGTTTCTGTTCCTT
CTCACCGTGCATTGAGCAGGTGCAGCGCACATGCCAGGCGCTGGCAGCCCGCGGCTTCACGGAG
CTGAGCACCCTGGAGGTGCTGCCACAGGTCTACAATGTGCGCACTGTCAGCCTGCCCCTGCCTG
ACCTAGGAGCCAACGACCCACAGGCCAGCACAGGCACTCCTGCCAATCCTGACGCCAGCCCCTT
CCGCAGCGGCACACCCATGAAGGAGGCTGTGGGCCACACAGGCTACCTGACTTTCGCCACCAAG
TCCCCAGGCTAACAGGTCCTGGGGGGAGCGCCAAGGAGCTGGGAGCATCCTGGGGCAAGCAGGA
AGGCCAGGGGCCACCTTTTATGGCAGTGGATGCCTGCTGGGGTTTGTGTTTAGAAACAGATGGT
GGGGCGGGGCTTGGGGCCTCCTGGGTGGCCAAAGGGGCAGGCAAGGAGGGATGGCCATTATCAT
CATCTGTGGTAGGAGTACTTCTGCTCTCATCCCTGCCGAGCCCAGGATCTGGTCTGACTGCTCT
TTGTAGTCAGTGTGAAACCTCACTGCCATAGGTTCTCCTGGGTGTTGAGGCTAAGGAGTGACAG
GGTCTAACTCCTTTCTCAGGTGGACCTATGGGAGAAAGGGGTGGAGGAGGGTCAGAGCTTGCAG
TGTCTCATAGGGCTGGGGACCATCCCATCCCTGAGTCACTGGTGGTCCTGGGGCTTGGCCAGAA
GCCATGATGGAACTGACCTGGAGAATGCTGTCCTACCCTGCCCATCTCTGCCTCTCCAGTTGCT
GTGAGGACCGTGCTTACCTAGGATGCTGGGGCGGTGACCCTGCTGTCTGGCCTCCAAATACCCA
GGCCTCAGGTTTTCTCACATCCAGGGGCAGGATCTCCTGCCACCAACCCCCAGGAGGTTCATTC
TGTAGCCCTGGCCCAGCCAGAGCCCTTTATGAGTTATCTTTGGGGTCATGCCGCAGCCTGACCT
GCAGAGGAATTGCCCAGTATGATGGTTATTTGCTTCTGGTGACCTGGTGGCTCCATGTAGGAGC
CGGTGCAACCCCAAACCTCTGGTGACCGACCCTGGGCCTTCCTTGGCTTGTGGAGGAGGTCCTC
CATGGGGACAGTACTTCCAGTGGGGAGGAATCTCCAAAGAGGGCACCTTTATCACCACCTCTGG
AAGACTTAGGGCATGTTTCTCAAGGAGGGGGGGACATGAAGGATGAGTCACCAGGGCTTTAGTC
CCTGGTGGTCACCCCAGTGCATGGACTTGGGCCTGTGTCTAACGCTGAGGCCACTGGTGCAGAG
CTAGCCGTCAGAGCCTCAGGTGCCAAGCCAGCATGGCTGGCTCCCATGTATAGCTAAACAATAA
ATGTGCTCTCCCGCTA

hide sequence

RefSeq Acc Id:

XM_021732768 ⟹ XP_021588443

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	2,771,284 - 2,778,030 (-)	NCBI
SpeTri2.0	NW_004936621	1,600,241 - 1,606,946 (-)	NCBI

Sequence:

show sequence

CGGCGGGTGAGCTCCGCGCAGCGTGAGACTCCTTCCTCGCGTCCCGCATCCCTCCGGCGCCTGG
TCTAGCACTTGCAGACATCAACACAATGAGCTTCGTGGCCTATGAAGAGCTGATCAAAGAGGGT
GACACAGCCATCCTGTCACTGGGTCATGGCTCAATGGTGGCAGTGCGTGTGCAGCGAGGGGCAC
AGACCCAGACCCGGCACGGTGTCTTGCGGCATTCAGTCGACCTCATTGGCCGTCCCTTTGGCTC
CAAAGTGATCTGCAGCCGAGGTGGCTGGGTGTATGTGCTTCACCCCACACCTGAGCTCTGGACT
CTGAACTTACCACATCGCACACAAATCCTCTACTCCACTGACATCGCCCTGCTCACTATGATGC
TGGAGCTGCGGCCTGGCTCTGTGGTCTGCGAGTCTGGCACTGGTAGTGGTTCTGTGTCCCATGC
CATCATCCGCAGCATTGCCCCCACAGGCCACCTGCACACAGTGGAGTTTCATCAGCAGCGGGCA
GACAAAGCCAGGGAGGAGTTCCAGGAGCATCGAGTGGGCCACTGGGTGACAGTGCGCACCCAGG
ATGTGTGCCGCAGTGGCTTTGGTGTGAGCCACGTGGCTGATGCTGTCTTCTTGGACATCCCATC
ACCCTGGGAGGCTGTGGGCCATGCCTGGGATGCCCTCAAGGTTGAAGGTGGGCGTTTCTGTTCC
TTCTCACCGTGCATTGAGCAGGTGCAGCGCACATGCCAGGCGCTGGCAGCCCGCGGCTTCACGG
AGCTGAGCACCCTGGAGGTGCTGCCACAGGTCTACAATGTGCGCACTGTCAGCCTGCCCCTGCC
TGACCTAGGAGCCAACGACCCACAGGCCAGCACAGGCACTCCTGCCAATCCTGACGCCAGCCCC
TTCCGCAGCGGCACACCCATGAAGGAGGCTGTGGGCCACACAGGCTACCTGACTTTCGCCACCA
AGTCCCCAGGCTAACAGGTCCTGGGGGGAGCGCCAAGGAGCTGGGAGCATCCTGGGGCAAGCAG
GAAGGCCAGGGGCCACCTTTTATGGCAGTGGATGCCTGCTGGGGTTTGTGTTTAGAAACAGATG
GTGGGGCGGGGCTTGGGGCCTCCTGGGTGGCCAAAGGGGCAGGCAAGGAGGGATGGCCATTATC
ATCATCTGTGGTAGGAGTACTTCTGCTCTCATCCCTGCCGAGCCCAGGATCTGGTCTGACTGCT
CTTTGTAGTCAGTGTGAAACCTCACTGCCATAGGTTCTCCTGGGTGTTGAGGCTAAGGAGTGAC
AGGGTCTAACTCCTTTCTCAGGTGGACCTATGGGAGAAAGGGGTGGAGGAGGGTCAGAGCTTGC
AGTGTCTCATAGGGCTGGGGACCATCCCATCCCTGAGTCACTGGTGGTCCTGGGGCTTGGCCAG
AAGCCATGATGGAACTGACCTGGAGAATGCTGTCCTACCCTGCCCATCTCTGCCTCTCCAGTTG
CTGTGAGGACCGTGCTTACCTAGGATGCTGGGGCGGTGACCCTGCTGTCTGGCCTCCAAATACC
CAGGCCTCAGGTTTTCTCACATCCAGGGGCAGGATCTCCTGCCACCAACCCCCAGGAGGTTCAT
TCTGTAGCCCTGGCCCAGCCAGAGCCCTTTATGAGTTATCTTTGGGGTCATGCCGCAGCCTGAC
CTGCAGAGGAATTGCCCAGTATGATGGTTATTTGCTTCTGGTGACCTGGTGGCTCCATGTAGGA
GCCGGTGCAACCCCAAACCTCTGGTGACCGACCCTGGGCCTTCCTTGGCTTGTGGAGGAGGTCC
TCCATGGGGACAGTACTTCCAGTGGGGAGGAATCTCCAAAGAGGGCACCTTTATCACCACCTCT
GGAAGACTTAGGGCATGTTTCTCAAGGAGGGGGGGACATGAAGGATGAGTCACCAGGGCTTTAG
TCCCTGGTGGTCACCCCAGTGCATGGACTTGGGCCTGTGTCTAACGCTGAGGCCACTGGTGCAG
AGCTAGCCGTCAGAGCCTCAGGTGCCAAGCCAGCATGGCTGGCTCCCATGTATAGCTAAACAAT
AAATGTGCTCTCCCGCTA

hide sequence

RefSeq Acc Id:

XM_040274051 ⟹ XP_040129985

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	2,771,284 - 2,777,906 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005334723	(Get FASTA)	NCBI Sequence Viewer
	XP_021588442	(Get FASTA)	NCBI Sequence Viewer
	XP_021588443	(Get FASTA)	NCBI Sequence Viewer
	XP_040129985	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000008777.2

RefSeq Acc Id:

XP_005334723 ⟸ XM_005334666

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSFVAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRGG
WVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIRSIAPT
GHLHTVEFHQQRADKAREEFQEHRVGHWVTVRTQDVCRSGFGVSHVADAVFLDIPSPWEAVGHA
WDALKVEGGRFCSFSPCIEQVQRTCQALAARGFTELSTLEVLPQVYNVRTVSLPLPDLGANDPQ
ASTGTPANPDASPFRSGTPMKEAVGHTGYLTFATKSPG

hide sequence

RefSeq Acc Id:	XP_021588442 ⟸ XM_021732767
- Peptide Label:	isoform X2
- UniProtKB:	I3ME80 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSFVAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRGG WVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIRSIAPT GHLHTVEFHQQRADKAREEFQEHRVGHWVTVRTQDVCRSGFGVSHVADAVFLDIPSPWEAVGHA WDALKVEGGRFCSFSPCIEQVQRTCQALAARGFTELSTLEVLPQVYNVRTVSLPLPDLGANDPQ ASTGTPANPDASPFRSGTPMKEAVGHTGYLTFATKSPG hide sequence

RefSeq Acc Id:	XP_021588443 ⟸ XM_021732768
- Peptide Label:	isoform X2
- UniProtKB:	I3ME80 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSFVAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRGG WVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIRSIAPT GHLHTVEFHQQRADKAREEFQEHRVGHWVTVRTQDVCRSGFGVSHVADAVFLDIPSPWEAVGHA WDALKVEGGRFCSFSPCIEQVQRTCQALAARGFTELSTLEVLPQVYNVRTVSLPLPDLGANDPQ ASTGTPANPDASPFRSGTPMKEAVGHTGYLTFATKSPG hide sequence

RefSeq Acc Id:	XP_040129985 ⟸ XM_040274051
- Peptide Label:	isoform X2
- UniProtKB:	I3ME80 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000008777 ⟸ ENSSTOT00000009787

Protein Domains

tRNA (adenine(58)-N(1))-methyltransferase catalytic

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000009792	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000009787.3	UniProtKB/TrEMBL
Gene3D-CATH	3.10.330.20	UniProtKB/TrEMBL
	3.40.50.150	UniProtKB/TrEMBL
InterPro	SAM-dependent_MTases	UniProtKB/TrEMBL
	TRM61_C	UniProtKB/TrEMBL
	tRNA_MeTrfase_Gcd14	UniProtKB/TrEMBL
NCBI Gene	Trmt61a	ENTREZGENE
PANTHER	PTHR12133	UniProtKB/TrEMBL
	TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE CATALYTIC SUBUNIT TRMT61A	UniProtKB/TrEMBL
Pfam	GCD14	UniProtKB/TrEMBL
PIRSF	GCD14	UniProtKB/TrEMBL
PROSITE	SAM_TRM61	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53335	UniProtKB/TrEMBL
UniProt	I3ME80	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar