Kif2b (kinesin family member 2B) - Rat Genome Database

Name: Kif2b
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Kif2b (kinesin family member 2B) Ictidomys tridecemlineatus

Analyze

Symbol:

Kif2b

Name:

kinesin family member 2B

RGD ID:

12621164

Description:

ENCODES a protein that exhibits ATP binding (inferred); cytoskeletal motor activity (inferred); microtubule binding (inferred); INVOLVED IN cell division (inferred); metaphase chromosome alignment (inferred); microtubule depolymerization (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN centrosome (inferred); cytoplasm (inferred); cytoskeleton (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

kinesin-like protein KIF2B

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	28,663,898 - 28,673,429 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	8,409,104 - 8,411,119 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	8,409,068 - 8,411,119 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

metaphase chromosome alignment (IEA)

microtubule depolymerization (IEA)

microtubule-based movement (IEA)

regulation of chromosome segregation (IEA)

Cellular Component

centrosome (IEA)

cytoplasm (IEA)

cytoskeleton (IEA)

intercellular bridge (IEA)

microtubule (IEA)

microtubule cytoskeleton (IEA)

mitotic spindle (IEA)

nucleolus (IEA)

spindle (IEA)

Molecular Function

ATP binding (IEA)

cytoskeletal motor activity (IEA)

microtubule binding (IEA)

microtubule motor activity (IEA)

nucleotide binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Kif2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	28,663,898 - 28,673,429 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	8,409,104 - 8,411,119 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	8,409,068 - 8,411,119 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KIF2B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	53,822,927 - 53,825,193 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	53,822,927 - 53,825,193 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	51,900,288 - 51,902,554 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	49,255,238 - 49,257,572 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	49,255,260 - 49,257,572	NCBI
Celera	17	48,360,940 - 48,363,277 (+)	NCBI		Celera
Cytogenetic Map	17	q22	NCBI
HuRef	17	47,268,438 - 47,270,775 (+)	NCBI		HuRef
CHM1_1	17	51,965,329 - 51,967,663 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	54,698,157 - 54,700,426 (+)	NCBI		T2T-CHM13v2.0

Kif2b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	91,466,112 - 91,468,381 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	91,466,141 - 91,468,384 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	91,575,286 - 91,577,555 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	91,575,315 - 91,577,558 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	91,436,600 - 91,438,869 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	91,391,376 - 91,393,659 (-)	NCBI		MGSCv36	mm8
Celera	11	101,178,683 - 101,180,952 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	56.1	NCBI

Kif2b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	76,891,199 - 76,893,418 (-)	NCBI		GRCr8
mRatBN7.2	10	76,394,160 - 76,396,379 (-)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	10	81,014,433 - 81,016,652 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	80,512,420 - 80,514,639 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	76,004,066 - 76,006,285 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	79,095,588 - 79,097,807 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	79,095,593 - 79,097,807 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	78,940,770 - 78,942,989 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	79,994,602 - 79,996,812 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	80,008,976 - 80,011,188 (-)	NCBI
Celera	10	75,248,767 - 75,250,986 (-)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

Kif2b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955451	8,528,405 - 8,530,661 (-)	NCBI	ChiLan1.0	ChiLan1.0

KIF2B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	70,007,454 - 70,025,878 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	74,816,356 - 74,824,007 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	47,916,301 - 47,918,788 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	52,782,339 - 52,784,667 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	52,782,489 - 52,784,510 (+)	Ensembl	panpan1.1		panPan2

KIF2B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	29,220,252 - 29,226,481 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	29,223,733 - 29,226,656 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	28,557,486 - 28,559,754 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	30,014,024 - 30,016,292 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	9	28,791,049 - 28,793,317 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	29,039,407 - 29,041,675 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	29,168,950 - 29,171,218 (+)	NCBI		UU_Cfam_GSD_1.0

KIF2B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	30,161,677 - 30,163,731 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	30,161,677 - 30,163,731 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	30,676,503 - 30,678,812 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KIF2B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	39,521,560 - 39,523,897 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	39,521,725 - 39,523,746 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	10,183,777 - 10,186,302 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kif2b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624795	9,359,126 - 9,361,304 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005321940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000011516 ⟹ ENSSTOP00000022986

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936490	8,409,104 - 8,411,119 (-)	Ensembl

RefSeq Acc Id:

XM_005321940 ⟹ XP_005321997

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	28,663,898 - 28,673,429 (+)	NCBI
SpeTri2.0	NW_004936490	8,409,068 - 8,411,119 (-)	NCBI

Sequence:

show sequence

ATGGCAAGCCAGTTCTGCCTCCCTCTTGCCCCACGACTTTCACCCCTGAAAGCCTTGAAGTCGC
ACTTCAGAGACATCCAAGTGGGCATCTGCCTGGCGATCCAGCGCAGCGACAAGAGGATCCATCT
TGCTGTAGTCACAGAGATCAACAGAGAAAAATCTTGGGTCACAGTTGAGTGGATTGAGAAAGGA
GTCAAGAAAGGCAAGAAGATCGATCTAGAGTCCATATTCCTGCTGAATCCAGCTCTGGCCTCTG
CAGAACATAGCACCACGTTGCCTAGGCCCTTGCCCTCATTGTCCCTAGTACCCTCCAAGGCCAT
TGGAGATCAGCGTACATCCCCAAGGTGGATTGTGGTTGCCCCCCAGAAAAATGAAACACCCTCA
GGGGACAGCTCGGTCCTGGGGGTCCCCGCCAGCCCTTGTCTGATGAAGCGGAAAAAGTCTCCTT
GCCTTCGGGAAATCGAGAAATTGCAAAAGCAGAGGGAGAAGCGCAGGCGCCTGCAGTTGGAGAT
CCGAGCCAGACGCGCCCTCAACGTCAACACGGGAAACCCAAACTTCGAGATCATGCGCATGATC
GAAGAGTGCCGCAGACACCTGGACAAAAGCAAGATGTCCATCATGGAGCCCCTGGAAGATCACC
GGATCTGTGTCTGCGTGAGGAAGAGGCCTCTTAATCAGCGAGAGACCACCATGAAGGACCTGGA
TATCATCACCATCCCCTCTGACAATGTAGTCATGGTGCACGAGTCCAAGCAGAAGGTGGACCTC
ACCCGCTACCTGGAGAACCAGACCTTCTGTTTCGACCATGCTTTTGATGACAAGGCCTCCAATG
AGTTAGTGTACCAGTTCACTGCCCAGCCATTGGTGGAGTCTATCTTCCGCAAGGGCATGGCCAC
CTGCTTTGCCTATGGACAAACGGGCAGTGGGAAAACGCACACCATGGGCGGAGCCTTTTCTGGA
ACGTCTCAAGATTGCTCTAAAGGTATTTACGCCTTGGTAGCGCAAGACGTCTTTCTCTTGCTCA
AAAACTCCACTTACGAGAATCTGGACCTCAAAGTCTATGGGACCTTTTTTGAGATTTATGGTGG
CAAAGTGTATGACTTGTTGAACTGGAAGAGGAAGCTCCAAGTCCTCGAGGATGGCAATCAGCAA
ATGCAAGTTGTCGGGCTGCAGGAGAAAGAGGTGGGCTCCGTGGAGGACGTGCTGAACCTGGTGG
AACTGGGAAACGGCTGTCGGACTTCGGGACAAACGTCTGTCAATGCCCACTCATCCCGGAGCCA
CGCGGTTTTCCAGATCATCTTGAAGTCAAGAGGGAAACTGCACGGCAAGTTCTCTCTGGTTGAT
TTAGCTGGGAACGAGAGGGGAGCAGACACCGCCAAGGCCAACCGCAAGAGGCAGCTGGAAGGGG
CGGAGATTAACAAGAGTCTCCTGGCCCTCAAAGAATGCATCAGGGCTTTGGGTCAGAACAAACC
TCACACCCCTTTCAGAGCCAGCAAACTCACGCAGGTGCTCCGGGACTCCTTCATAGGCCAGAAC
TCTTCCACTTGCATGATCGCTACCATCTCACCAGGGATGACCTCTTGTGAAAACACCCTCAACA
CTTTAAGATATGCAAACAGAGTGAAAGAGTTAGCCCTGGATGTGAGGCCTTACCACCAATGCCT
GACTCCCATTAAACACGAGACACCGCCCATGTTTGAAAAGCACATTAAAAATTCAGAAATAGCC
CTTCAGAGGGAAGAGCTTGTTAAAATATCGTGTCTACAGAGTGAGGAGGAGAAACGGAGTGAAG
CGATTGCCACACTAGCCACGCCCTTAATAAGGGAGGCCGTGACTACCTGGAAGGATTCTAGTTC
GTGGTGGGAGAGCATCCAGGAGACAGCTAATGGCGTGAACTATGATGTTGACTTTTGCATTGCC
CAGTCATTGTCCATTTTGGAGGAGAAAATTGGTATTCTGACCGAGATCCAAACGAAACTGAAAT
TATTAAGAGTTGACCTCCAAAACCAAGAGCAAGGTAGAATGAAGCCAAAGGCAAGCGATCAGGA
CTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005321997	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000022986.2
GenBank Protein	KAG3269302	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005321997 ⟸ XM_005321940

- UniProtKB:

I3NF39 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASQFCLPLAPRLSPLKALKSHFRDIQVGICLAIQRSDKRIHLAVVTEINREKSWVTVEWIEKG
VKKGKKIDLESIFLLNPALASAEHSTTLPRPLPSLSLVPSKAIGDQRTSPRWIVVAPQKNETPS
GDSSVLGVPASPCLMKRKKSPCLREIEKLQKQREKRRRLQLEIRARRALNVNTGNPNFEIMRMI
EECRRHLDKSKMSIMEPLEDHRICVCVRKRPLNQRETTMKDLDIITIPSDNVVMVHESKQKVDL
TRYLENQTFCFDHAFDDKASNELVYQFTAQPLVESIFRKGMATCFAYGQTGSGKTHTMGGAFSG
TSQDCSKGIYALVAQDVFLLLKNSTYENLDLKVYGTFFEIYGGKVYDLLNWKRKLQVLEDGNQQ
MQVVGLQEKEVGSVEDVLNLVELGNGCRTSGQTSVNAHSSRSHAVFQIILKSRGKLHGKFSLVD
LAGNERGADTAKANRKRQLEGAEINKSLLALKECIRALGQNKPHTPFRASKLTQVLRDSFIGQN
SSTCMIATISPGMTSCENTLNTLRYANRVKELALDVRPYHQCLTPIKHETPPMFEKHIKNSEIA
LQREELVKISCLQSEEEKRSEAIATLATPLIREAVTTWKDSSSWWESIQETANGVNYDVDFCIA
QSLSILEEKIGILTEIQTKLKLLRVDLQNQEQGRMKPKASDQD

hide sequence

RefSeq Acc Id:

ENSSTOP00000022986 ⟸ ENSSTOT00000011516

Protein Domains

Kinesin motor

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000011516	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000011516.3	UniProtKB/TrEMBL
Gene3D-CATH	3.40.850.10	UniProtKB/TrEMBL
InterPro	Kinesin-like_fam	UniProtKB/TrEMBL
	Kinesin_motor_CS	UniProtKB/TrEMBL
	Kinesin_motor_dom	UniProtKB/TrEMBL
	Kinesin_motor_dom_sf	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
NCBI Gene	Kif2b	ENTREZGENE
PANTHER	KINESIN-LIKE PROTEIN	UniProtKB/TrEMBL
	KINESIN-RELATED PROTEIN 6	UniProtKB/TrEMBL
Pfam	Kinesin	UniProtKB/TrEMBL
PRINTS	KINESINHEAVY	UniProtKB/TrEMBL
PROSITE	KINESIN_MOTOR_1	UniProtKB/TrEMBL
	KINESIN_MOTOR_2	UniProtKB/TrEMBL
SMART	KISc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	I3NF39	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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