Rxrg (retinoid X receptor gamma) - Rat Genome Database

Name: Rxrg
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Rxrg (retinoid X receptor gamma) Ictidomys tridecemlineatus

Analyze

Symbol:

Rxrg

Name:

retinoid X receptor gamma

RGD ID:

12620966

Description:

ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); molecular condensate scaffold activity (inferred); INVOLVED IN cellular response to hormone stimulus (ortholog); heart development (ortholog); neuron differentiation (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

retinoic acid receptor RXR-gamma; retinoid X receptor gamma, transcript variant X1; retinoid X receptor gamma, transcript variant X2; retinoid X receptor gamma, transcript variant X3; retinoid X receptor gamma, transcript variant X4

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	101,933,905 - 101,979,926 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	19,789,641 - 19,826,698 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	19,789,753 - 19,826,665 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

lung non-small cell carcinoma (ISO)

Myocardial Ischemia (ISO)

parathyroid carcinoma (ISO)

thyroid gland papillary carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

cellular response to hormone stimulus (ISO)

heart development (ISO)

neuron differentiation (ISO)

peripheral nervous system development (ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of myelination (ISO)

regulation of transcription by RNA polymerase II (IEA)

response to organic cyclic compound (ISO)

response to retinoic acid (IEA,ISO)

retinoic acid receptor signaling pathway (IEA,ISO)

skeletal muscle tissue development (ISO)

steroid hormone mediated signaling pathway (IEA)

Cellular Component

cytoplasm (IEA)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

metal ion binding (IEA)

molecular condensate scaffold activity (IEA)

nuclear receptor activity (IEA)

nuclear steroid receptor activity (IEA)

protein binding (ISO)

retinoic acid-responsive element binding (IEA)

sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

retinoic acid signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Rxrg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	101,933,905 - 101,979,926 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	19,789,641 - 19,826,698 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	19,789,753 - 19,826,665 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RXRG
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	165,400,922 - 165,445,126 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	165,400,922 - 165,445,355 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	165,370,159 - 165,414,363 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	163,636,974 - 163,681,054 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	162,102,008 - 162,146,088	NCBI
Celera	1	138,475,332 - 138,519,756 (-)	NCBI		Celera
Cytogenetic Map	1	q23.3	NCBI
HuRef	1	136,616,922 - 136,661,341 (-)	NCBI		HuRef
CHM1_1	1	166,792,871 - 166,837,301 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	164,747,271 - 164,791,474 (-)	NCBI		T2T-CHM13v2.0

Rxrg
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	167,425,902 - 167,467,191 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	167,425,953 - 167,467,192 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	167,598,362 - 167,639,623 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	167,598,384 - 167,639,623 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	169,528,493 - 169,569,754 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	169,435,059 - 169,476,298 (+)	NCBI		MGSCv36	mm8
Celera	1	170,022,008 - 170,069,461 (+)	NCBI		Celera
Cytogenetic Map	1	H2.3	NCBI
cM Map	1	74.99	NCBI

Rxrg
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	82,276,330 - 82,318,097 (+)	NCBI		GRCr8
mRatBN7.2	13	79,743,430 - 79,785,173 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	79,743,563 - 79,785,167 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	82,373,401 - 82,414,881 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	83,680,439 - 83,722,040 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	80,918,510 - 80,960,010 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	85,818,473 - 85,868,555 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	85,818,427 - 85,868,552 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	90,460,380 - 90,511,048 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	83,256,823 - 83,298,724 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	83,287,103 - 83,307,114 (+)	NCBI
Celera	13	79,448,171 - 79,489,515 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

Rxrg
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955462	11,238,794 - 11,281,956 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955462	11,238,963 - 11,281,905 (+)	NCBI	ChiLan1.0	ChiLan1.0

RXRG
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	84,320,687 - 84,365,083 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	83,989,216 - 84,033,594 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	140,832,717 - 140,877,046 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	144,623,133 - 144,667,503 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	144,623,133 - 144,723,494 (-)	Ensembl	panpan1.1		panPan2

RXRG
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	17,867,123 - 17,912,328 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	17,867,182 - 17,920,085 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	17,922,970 - 17,968,200 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	17,947,065 - 17,992,337 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	17,947,141 - 18,000,604 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	17,919,625 - 17,964,835 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	18,271,342 - 18,316,575 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	18,565,728 - 18,610,954 (+)	NCBI		UU_Cfam_GSD_1.0

RXRG
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	85,308,508 - 85,357,137 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	85,158,313 - 85,357,116 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	92,982,235 - 93,063,524 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RXRG
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	63,444,128 - 63,490,594 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	63,443,944 - 63,490,635 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	65,204,356 - 65,250,988 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rxrg
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624826	3,736,290 - 3,780,338 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624826	3,723,056 - 3,969,597 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005319858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013356191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013356192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021722698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040277370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000010240 ⟹ ENSSTOP00000009188

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936481	19,789,641 - 19,826,698 (+)	Ensembl

RefSeq Acc Id:

XM_005319858 ⟹ XP_005319915

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	101,942,670 - 101,979,926 (+)	NCBI
SpeTri2.0	NW_004936481	19,789,753 - 19,826,481 (+)	NCBI

Sequence:

show sequence

TGGGAGCGGAGTCGCAGCACAACCCGCCCGAGTTAATCAAACTAGCAACAGGGTCGGCGGCAGG
AGCAGGAGCAGGAGCGCGCGGCTTTACGCGATTACTGACAGGCACCAGCTGCCGCGGCGGCTCG
GCGCACCATGTGGACCTGCGCTGGGGGGCAGACGCCTGACTAATCCCGCTGGCCCGGCCCTGCT
CCGCGGCTCGGAGGCGATGGCCACTCGCGCGAGCCCAAGTTGAAGCCGCGGGCTGCGCGGAGCC
CGAGGGGCGTGATCCTCAGTGGGCGCAGGCGGAGGATGAACTGAGGATCAACATGTACGGGAAT
TACCCTCACTTCATGAAGTTTCCTGCAGGCTTTGGCGGCTCCCCTGGCCACGCCGGCTCCACCT
CCATGAGCCCGTCAGCAGCCCTGTCCACAGGGAAGCCCATGGACAGCCACCCCAGCTTCACGGA
CACCCCTGTGAGTGCCCCACGGACGCTGAGTGCGACGGGGACCCCCCTCACTGCCCTGGGCTCC
CCGTACCGCGTCATCACGACTGCCATGGGCCCGCCCTCGGGGGCGCTGGCGGCCCCTCCAGGAG
TCAGGCTGGTGGCCCCACCCAGCTCTCAGCTCAATGTGGTCAACAGCGTCAGCAGCTCGGAGGA
CATCAAGCCCTTACCGGGGCTTCCTGGGCTTGGAAACATGAGCTACCCGTCGGCCAGCCCCGGA
TCTCTGGTTAAACACATCTGTGCCATCTGTGGGGACAGATCCTCAGGAAAGCACTACGGGGTGT
ACAGCTGCGAGGGCTGCAAGGGCTTCTTCAAGAGGACCATCAGGAAGGACCTGGTTTACACCTG
CCGGGACAACAAGGACTGCCTCATCGACAAGCGCCAGCGCAACCGCTGCCAGTACTGCCGCTAC
CAGAAGTGCCTGGTCATGGGCATGAAGCGGGAGGCTGTGCAGGAAGAGCGGCAACGGAGCCGGG
AGAGGGCGGAGAGCGAGGCCGACTGTGCGGGTGGTGGCCACGAGGACATGCCAGTGGAGAGGAT
CCTGGAGGCCGAGCTGGCGGTGGAGCCCAAGACGGAGTCCTACGGGGACCTGAGCATGGAGAGC
TCGACCAACGACCCCGTCACCAACATCTGCCACGCAGCCGACAAGCAGCTCTTCACGCTGGTCG
AGTGGGCCAAGCGCGTGCCCCACTTCTCGGACCTCACCTTGGAGGACCAGGTCATTCTGCTCCG
GGCAGGGTGGAACGAGCTGCTGATCGCCTCCTTCTCCCACCGCTCGGTCTCCGTGCAGGACGGC
ATCCTGCTGGCCACAGGTCTCCACGTCCACCGGAGCAGCGCCCACAGTGCTGGTGTCGGCTCCA
TCTTTGACAGAGTTTTGACCGAGCTGGTTTCCAAGATGAAGGACATGCAGATGGACAAGTCGGA
GCTGGGGTGCCTGCGAGCCATTGTGCTGTTCAACCCAGATGCCAAAGGTCTGTCCAACCCCTCG
GAGGTGGAGACCCTGCGGGAGAAGGTCTATGCCACCCTGGAGGCCTACACCAAGCAGAAGTATC
CGGAACAGCCAGGCAGGTTCGCCAAGCTGCTGCTGCGCCTGCCCGCGCTGCGCTCCATTGGCTT
GAAGTGCCTGGAGCACCTCTTCTTCTTCAAGCTCATCGGGGACACCCCCATTGACACCTTCCTC
ATGGAGATGTTGGAGACCCCGCTGCAGATCACCTGAGCTCCACAGCCGTGGCCCCCCAGGATCC
CCGGCAGGTGTGTGGCGCCCACCTGCGCTCTTCCCTCCCCCGCCCCTCCCTGCCCCCCAAGATG
ATGCTCGTAATAAAGAAGACCCTTCT

hide sequence

RefSeq Acc Id:

XM_013356191 ⟹ XP_013211645

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	101,958,449 - 101,979,926 (+)	NCBI
SpeTri2.0	NW_004936481	19,805,235 - 19,826,665 (+)	NCBI

Sequence:

show sequence

AGCTGCCAAGTGCTGGCAGAGCTGTGACCGGACACTCACCAGCCTTCAGGGCTGGGGCTCCGGA
ACCACACGGCAGCGGAACTTTGCCCAACTCACCCGACTCCCCGGCTAGAAGGCCTCTGTGTTCC
CGCGGGTCGTGGACTCGGACCACTTGGGGCAGAGCTCCTGTGCACCGGGTCATCCTAGCCTAGG
ACTGGCCGGGGTGGGACTCCACAGGAGCATGCTCCACCTGTGACCGCTCAATGTGGTCAACAGC
GTCAGCAGCTCGGAGGACATCAAGCCCTTACCGGGGCTTCCTGGGCTTGGAAACATGAGCTACC
CGTCGGCCAGCCCCGGATCTCTGGTTAAACACATCTGTGCCATCTGTGGGGACAGATCCTCAGG
AAAGCACTACGGGGTGTACAGCTGCGAGGGCTGCAAGGGCTTCTTCAAGAGGACCATCAGGAAG
GACCTGGTTTACACCTGCCGGGACAACAAGGACTGCCTCATCGACAAGCGCCAGCGCAACCGCT
GCCAGTACTGCCGCTACCAGAAGTGCCTGGTCATGGGCATGAAGCGGGAGGCTGTGCAGGAAGA
GCGGCAACGGAGCCGGGAGAGGGCGGAGAGCGAGGCCGACTGTGCGGGTGGTGGCCACGAGGAC
ATGCCAGTGGAGAGGATCCTGGAGGCCGAGCTGGCGGTGGAGCCCAAGACGGAGTCCTACGGGG
ACCTGAGCATGGAGAGCTCGACCAACGACCCCGTCACCAACATCTGCCACGCAGCCGACAAGCA
GCTCTTCACGCTGGTCGAGTGGGCCAAGCGCGTGCCCCACTTCTCGGACCTCACCTTGGAGGAC
CAGGTCATTCTGCTCCGGGCAGGGTGGAACGAGCTGCTGATCGCCTCCTTCTCCCACCGCTCGG
TCTCCGTGCAGGACGGCATCCTGCTGGCCACAGGTCTCCACGTCCACCGGAGCAGCGCCCACAG
TGCTGGTGTCGGCTCCATCTTTGACAGAGTTTTGACCGAGCTGGTTTCCAAGATGAAGGACATG
CAGATGGACAAGTCGGAGCTGGGGTGCCTGCGAGCCATTGTGCTGTTCAACCCAGATGCCAAAG
GTCTGTCCAACCCCTCGGAGGTGGAGACCCTGCGGGAGAAGGTCTATGCCACCCTGGAGGCCTA
CACCAAGCAGAAGTATCCGGAACAGCCAGGCAGGTTCGCCAAGCTGCTGCTGCGCCTGCCCGCG
CTGCGCTCCATTGGCTTGAAGTGCCTGGAGCACCTCTTCTTCTTCAAGCTCATCGGGGACACCC
CCATTGACACCTTCCTCATGGAGATGTTGGAGACCCCGCTGCAGATCACCTGAGCTCCACAGCC
GTGGCCCCCCAGGATCCCCGGCAGGTGTGTGGCGCCCACCTGCGCTCTTCCCTCCCCCGCCCCT
CCCTGCCCCCCAAGATGATGCTCGTAATAAAGAAGACCCTTCTCCACGTGAGCCTTTGATAGAT
GGAGCTTTGTACAGACGTAAGGTGACCCTTCTTTGCTATCTATGGGGCTGGGTCTCTCTGGAAG
GTCTTGGGAAGCTGGCCAAGCCTCTGTACATAGGACTGGTTTAAATTATTTTTTCACTTGCCAT
GGAAAGCGAACAAAGAACAAAATAATAAATATGAT

hide sequence

RefSeq Acc Id:

XM_013356192 ⟹ XP_013211646

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	101,957,243 - 101,979,926 (+)	NCBI
SpeTri2.0	NW_004936481	19,804,127 - 19,826,665 (+)	NCBI

Sequence:

show sequence

CGCCACACCTACTAGGTCTCTTCCTGGGGAACAGCCAGCGTCACTGCTGCCCACTCCCAGCACA
GCTCCTCAGGCCACAGTGCCACCAGATATCTGGTCAAGCCTTGTTCCCGTGTCTCTGGATGACA
GCTCAATGTGGTCAACAGCGTCAGCAGCTCGGAGGACATCAAGCCCTTACCGGGGCTTCCTGGG
CTTGGAAACATGAGCTACCCGTCGGCCAGCCCCGGATCTCTGGTTAAACACATCTGTGCCATCT
GTGGGGACAGATCCTCAGGAAAGCACTACGGGGTGTACAGCTGCGAGGGCTGCAAGGGCTTCTT
CAAGAGGACCATCAGGAAGGACCTGGTTTACACCTGCCGGGACAACAAGGACTGCCTCATCGAC
AAGCGCCAGCGCAACCGCTGCCAGTACTGCCGCTACCAGAAGTGCCTGGTCATGGGCATGAAGC
GGGAGGCTGTGCAGGAAGAGCGGCAACGGAGCCGGGAGAGGGCGGAGAGCGAGGCCGACTGTGC
GGGTGGTGGCCACGAGGACATGCCAGTGGAGAGGATCCTGGAGGCCGAGCTGGCGGTGGAGCCC
AAGACGGAGTCCTACGGGGACCTGAGCATGGAGAGCTCGACCAACGACCCCGTCACCAACATCT
GCCACGCAGCCGACAAGCAGCTCTTCACGCTGGTCGAGTGGGCCAAGCGCGTGCCCCACTTCTC
GGACCTCACCTTGGAGGACCAGGTCATTCTGCTCCGGGCAGGGTGGAACGAGCTGCTGATCGCC
TCCTTCTCCCACCGCTCGGTCTCCGTGCAGGACGGCATCCTGCTGGCCACAGGTCTCCACGTCC
ACCGGAGCAGCGCCCACAGTGCTGGTGTCGGCTCCATCTTTGACAGAGTTTTGACCGAGCTGGT
TTCCAAGATGAAGGACATGCAGATGGACAAGTCGGAGCTGGGGTGCCTGCGAGCCATTGTGCTG
TTCAACCCAGATGCCAAAGGTCTGTCCAACCCCTCGGAGGTGGAGACCCTGCGGGAGAAGGTCT
ATGCCACCCTGGAGGCCTACACCAAGCAGAAGTATCCGGAACAGCCAGGCAGGTTCGCCAAGCT
GCTGCTGCGCCTGCCCGCGCTGCGCTCCATTGGCTTGAAGTGCCTGGAGCACCTCTTCTTCTTC
AAGCTCATCGGGGACACCCCCATTGACACCTTCCTCATGGAGATGTTGGAGACCCCGCTGCAGA
TCACCTGAGCTCCACAGCCGTGGCCCCCCAGGATCCCCGGCAGGTGTGTGGCGCCCACCTGCGC
TCTTCCCTCCCCCGCCCCTCCCTGCCCCCCAAGATGATGCTCGTAATAAAGAAGACCCTTCTCC
ACGTGAGCCTTTGATAGATGGAGCTTTGTACAGACGTAAGGTGACCCTTCTTTGCTATCTATGG
GGCTGGGTCTCTCTGGAAGGTCTTGGGAAGCTGGCCAAGCCTCTGTACATAGGACTGGTTTAAA
TTATTTTTTCACTTGCCATGGAAAGCGAACAAAGAACAAAATAATAAATATGAT

hide sequence

RefSeq Acc Id:

XM_021722698 ⟹ XP_021578373

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	101,942,674 - 101,979,926 (+)	NCBI
SpeTri2.0	NW_004936481	19,789,761 - 19,826,665 (+)	NCBI

Sequence:

show sequence

GAGTCGCAGCACAACCCGCCCGAGTTAATCAAACTAGCAACAGGGTCGGCGGCAGGAGCAGGAG
CAGGAGCGCGCGGCTTTACGCGATTACTGACAGGCACCAGCTGCCGCGGCGGCTCGGCGCACCA
TGTGGACCTGCGCTGGGGGGCAGACGCCTGACTAATCCCGCTGGCCCGGCCCTGCTCCGCGGCT
CGGAGGCGATGGCCACTCGCGCGAGCCCAAGTTGAAGCCGCGGGCTGCGCGGAGCCCGAGGGGC
GTGATCCTCAGTGGGCGCAGGCGGAGGATGAACTGAGGATCAACATGTACGGGAATTACCCTCA
CTTCATGAAGTTTCCTGCAGGCTTTGGCGGCTCCCCTGGCCACGCCGGCTCCACCTCCATGAGC
CCGTCAGCAGCCCTGTCCACAGGGAAGCCCATGGACAGCCACCCCAGCTTCACGGACACCCCTC
TCAATGTGGTCAACAGCGTCAGCAGCTCGGAGGACATCAAGCCCTTACCGGGGCTTCCTGGGCT
TGGAAACATGAGCTACCCGTCGGCCAGCCCCGGATCTCTGGTTAAACACATCTGTGCCATCTGT
GGGGACAGATCCTCAGGAAAGCACTACGGGGTGTACAGCTGCGAGGGCTGCAAGGGCTTCTTCA
AGAGGACCATCAGGAAGGACCTGGTTTACACCTGCCGGGACAACAAGGACTGCCTCATCGACAA
GCGCCAGCGCAACCGCTGCCAGTACTGCCGCTACCAGAAGTGCCTGGTCATGGGCATGAAGCGG
GAGGCTGTGCAGGAAGAGCGGCAACGGAGCCGGGAGAGGGCGGAGAGCGAGGCCGACTGTGCGG
GTGGTGGCCACGAGGACATGCCAGTGGAGAGGATCCTGGAGGCCGAGCTGGCGGTGGAGCCCAA
GACGGAGTCCTACGGGGACCTGAGCATGGAGAGCTCGACCAACGACCCCGTCACCAACATCTGC
CACGCAGCCGACAAGCAGCTCTTCACGCTGGTCGAGTGGGCCAAGCGCGTGCCCCACTTCTCGG
ACCTCACCTTGGAGGACCAGGTCATTCTGCTCCGGGCAGGGTGGAACGAGCTGCTGATCGCCTC
CTTCTCCCACCGCTCGGTCTCCGTGCAGGACGGCATCCTGCTGGCCACAGGTCTCCACGTCCAC
CGGAGCAGCGCCCACAGTGCTGGTGTCGGCTCCATCTTTGACAGAGTTTTGACCGAGCTGGTTT
CCAAGATGAAGGACATGCAGATGGACAAGTCGGAGCTGGGGTGCCTGCGAGCCATTGTGCTGTT
CAACCCAGATGCCAAAGGTCTGTCCAACCCCTCGGAGGTGGAGACCCTGCGGGAGAAGGTCTAT
GCCACCCTGGAGGCCTACACCAAGCAGAAGTATCCGGAACAGCCAGGCAGGTTCGCCAAGCTGC
TGCTGCGCCTGCCCGCGCTGCGCTCCATTGGCTTGAAGTGCCTGGAGCACCTCTTCTTCTTCAA
GCTCATCGGGGACACCCCCATTGACACCTTCCTCATGGAGATGTTGGAGACCCCGCTGCAGATC
ACCTGAGCTCCACAGCCGTGGCCCCCCAGGATCCCCGGCAGGTGTGTGGCGCCCACCTGCGCTC
TTCCCTCCCCCGCCCCTCCCTGCCCCCCAAGATGATGCTCGTAATAAAGAAGACCCTTCTCCAC
GTGAGCCTTTGATAGATGGAGCTTTGTACAGACGTAAGGTGACCCTTCTTTGCTATCTATGGGG
CTGGGTCTCTCTGGAAGGTCTTGGGAAGCTGGCCAAGCCTCTGTACATAGGACTGGTTTAAATT
ATTTTTTCACTTGCCATGGAAAGCGAACAAAGAACAAAATAATAAATATGAT

hide sequence

RefSeq Acc Id:

XM_040277370 ⟹ XP_040133304

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	101,933,905 - 101,979,926 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005319915	(Get FASTA)	NCBI Sequence Viewer
	XP_013211645	(Get FASTA)	NCBI Sequence Viewer
	XP_013211646	(Get FASTA)	NCBI Sequence Viewer
	XP_021578373	(Get FASTA)	NCBI Sequence Viewer
	XP_040133304	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009188.2
GenBank Protein	KAG3258849	(Get FASTA)	NCBI Sequence Viewer
	KAG3258850	(Get FASTA)	NCBI Sequence Viewer
	KAG3258851	(Get FASTA)	NCBI Sequence Viewer
	KAG3258852	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005319915 ⟸ XM_005319858
- Peptide Label:	isoform X2
- UniProtKB:	I3MF39 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYGNYPHFMKFPAGFGGSPGHAGSTSMSPSAALSTGKPMDSHPSFTDTPVSAPRTLSATGTPLT ALGSPYRVITTAMGPPSGALAAPPGVRLVAPPSSQLNVVNSVSSSEDIKPLPGLPGLGNMSYPS ASPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDNKDCLIDKRQRNRCQ YCRYQKCLVMGMKREAVQEERQRSRERAESEADCAGGGHEDMPVERILEAELAVEPKTESYGDL SMESSTNDPVTNICHAADKQLFTLVEWAKRVPHFSDLTLEDQVILLRAGWNELLIASFSHRSVS VQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGL SNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI DTFLMEMLETPLQIT hide sequence

RefSeq Acc Id:

XP_013211646 ⟸ XM_013356192

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSYPSASPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDNKDCLIDKRQ
RNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEADCAGGGHEDMPVERILEAELAVEPKTE
SYGDLSMESSTNDPVTNICHAADKQLFTLVEWAKRVPHFSDLTLEDQVILLRAGWNELLIASFS
HRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNP
DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI
GDTPIDTFLMEMLETPLQIT

hide sequence

RefSeq Acc Id:

XP_013211645 ⟸ XM_013356191

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSYPSASPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDNKDCLIDKRQ
RNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEADCAGGGHEDMPVERILEAELAVEPKTE
SYGDLSMESSTNDPVTNICHAADKQLFTLVEWAKRVPHFSDLTLEDQVILLRAGWNELLIASFS
HRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNP
DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLI
GDTPIDTFLMEMLETPLQIT

hide sequence

RefSeq Acc Id:

XP_021578373 ⟸ XM_021722698

- Peptide Label:

isoform X3

- Sequence:

show sequence

MYGNYPHFMKFPAGFGGSPGHAGSTSMSPSAALSTGKPMDSHPSFTDTPLNVVNSVSSSEDIKP
LPGLPGLGNMSYPSASPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDN
KDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEADCAGGGHEDMPVERILEA
ELAVEPKTESYGDLSMESSTNDPVTNICHAADKQLFTLVEWAKRVPHFSDLTLEDQVILLRAGW
NELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGC
LRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCL
EHLFFFKLIGDTPIDTFLMEMLETPLQIT

hide sequence

RefSeq Acc Id:	XP_040133304 ⟸ XM_040277370
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSSTOP00000009188 ⟸ ENSSTOT00000010240

Protein Domains

NR LBD Nuclear receptor

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010239	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010240.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.565.10	UniProtKB/TrEMBL
	3.30.50.10	UniProtKB/TrEMBL
InterPro	NHR-like_dom_sf	UniProtKB/TrEMBL
	Nuc_recep-AF1	UniProtKB/TrEMBL
	Nucl_hrmn_rcpt_lig-bd	UniProtKB/TrEMBL
	Nuclear_hrmn_rcpt	UniProtKB/TrEMBL
	Retinoid-X_rcpt/HNF4	UniProtKB/TrEMBL
	Znf_hrmn_rcpt	UniProtKB/TrEMBL
	Znf_NHR/GATA	UniProtKB/TrEMBL
NCBI Gene	Rxrg	ENTREZGENE
PANTHER	NUCLEAR HORMONE RECEPTOR	UniProtKB/TrEMBL
	RETINOIC ACID RECEPTOR RXR-GAMMA	UniProtKB/TrEMBL
Pfam	Hormone_recep	UniProtKB/TrEMBL
	Nuc_recep-AF1	UniProtKB/TrEMBL
	zf-C4	UniProtKB/TrEMBL
PRINTS	RETINOIDXR	UniProtKB/TrEMBL
	STRDHORMONER	UniProtKB/TrEMBL
	STROIDFINGER	UniProtKB/TrEMBL
PROSITE	NR_LBD	UniProtKB/TrEMBL
	NUCLEAR_REC_DBD_1	UniProtKB/TrEMBL
	NUCLEAR_REC_DBD_2	UniProtKB/TrEMBL
SMART	HOLI	UniProtKB/TrEMBL
	ZnF_C4	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	SSF48508	UniProtKB/TrEMBL
UniProt	I3MF39	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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