Scimp (SLP adaptor and CSK interacting membrane protein) - Rat Genome Database

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Gene: Scimp (SLP adaptor and CSK interacting membrane protein) Ictidomys tridecemlineatus
Analyze
Symbol: Scimp
Name: SLP adaptor and CSK interacting membrane protein
RGD ID: 12620884
Description: ENCODES a protein that exhibits molecular adaptor activity (inferred); INVOLVED IN cellular response to molecule of fungal origin (inferred); positive regulation of cytokine production involved in immune response (inferred); positive regulation of dendritic cell cytokine production (inferred); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); head and neck cancer (ortholog); FOUND IN filopodium (inferred); immunological synapse (inferred); leading edge membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC101955136
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,314,099 - 53,325,720 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,579,010 - 2,586,002 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,575,255 - 2,585,969 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Scimp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,314,099 - 53,325,720 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,579,010 - 2,586,002 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,575,255 - 2,585,969 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCIMP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38175,208,920 - 5,234,860 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl175,208,920 - 5,234,860 (-)EnsemblGRCh38hg38GRCh38
GRCh37175,112,215 - 5,138,155 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,054,429 - 5,078,861 (-)NCBINCBI36Build 36hg18NCBI36
Celera175,131,553 - 5,155,751 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef175,002,250 - 5,028,271 (-)NCBIHuRef
CHM1_1175,121,885 - 5,147,910 (-)NCBICHM1_1
T2T-CHM13v2.0175,102,281 - 5,128,266 (-)NCBIT2T-CHM13v2.0
Scimp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,681,758 - 70,703,387 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,681,758 - 70,703,412 (-)EnsemblGRCm39 Ensembl
GRCm381170,790,932 - 70,812,561 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,790,932 - 70,812,586 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,604,434 - 70,626,063 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,606,885 - 70,628,782 (-)NCBIMGSCv36mm8
Celera1178,344,966 - 78,367,476 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1143.21NCBI
Scimp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81056,006,243 - 56,026,357 (-)NCBIGRCr8
mRatBN7.21055,507,646 - 55,527,764 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,507,519 - 55,528,171 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,188,521 - 60,208,528 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,677,041 - 59,697,050 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,176,136 - 55,196,131 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,415,429 - 57,436,412 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,415,832 - 57,436,368 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,162,107 - 57,182,188 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,687,664 - 57,707,493 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1054,653,780 - 54,674,340 (-)NCBICelera
Cytogenetic Map10q24NCBI
Scimp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,547,294 - 10,578,387 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,547,706 - 10,578,355 (-)NCBIChiLan1.0ChiLan1.0
SCIMP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,805,039 - 12,845,040 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,788,690 - 14,813,413 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0175,258,376 - 5,283,747 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,246,916 - 5,271,070 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,247,307 - 5,270,817 (-)Ensemblpanpan1.1panPan2
SCIMP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,534,470 - 31,551,441 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,534,226 - 31,549,175 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,672,061 - 31,690,180 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,637,350 - 31,655,483 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,637,892 - 31,655,929 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,604,024 - 31,622,156 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,563,742 - 31,581,868 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,740,051 - 31,758,169 (+)NCBIUU_Cfam_GSD_1.0
SCIMP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,773,448 - 51,794,104 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,772,635 - 51,794,107 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21253,805,596 - 53,826,360 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCIMP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,616,325 - 4,643,791 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605916,956,757 - 16,980,247 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scimp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,974,587 - 9,007,986 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,975,216 - 8,982,825 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005337397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000001055   ⟹   ENSSTOP00000000942
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366772,579,010 - 2,586,002 (+)Ensembl
RefSeq Acc Id: XM_005337397   ⟹   XP_005337454
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560253,314,099 - 53,325,720 (-)NCBI
SpeTri2.0NW_0049366772,575,255 - 2,585,969 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005337454 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000942.3
GenBank Protein KAG3270091 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005337454   ⟸   XM_005337397
- UniProtKB: I3LXV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000000942   ⟸   ENSSTOT00000001055


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001058 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001055.3 UniProtKB/TrEMBL
InterPro SCIMP UniProtKB/TrEMBL
NCBI Gene Scimp ENTREZGENE
PANTHER BCL2 INTERACTING MEDIATOR OF CELL DEATH UniProtKB/TrEMBL
  PTHR12044:SF11 UniProtKB/TrEMBL
Pfam SCIMP UniProtKB/TrEMBL
UniProt I3LXV9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-09 Scimp  SLP adaptor and CSK interacting membrane protein  LOC101955136  SLP adaptor and CSK interacting membrane protein  Symbol and/or name change 5135510 APPROVED
2021-03-26 LOC101955136  SLP adaptor and CSK interacting membrane protein  Scimp  SLP adaptor and CSK interacting membrane protein  Symbol and/or name change 5135510 APPROVED