Scimp (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405602 | 53,314,099 - 53,325,720 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936677 | 2,579,010 - 2,586,002 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936677 | 2,575,255 - 2,585,969 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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SCIMP (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 17 | 5,208,920 - 5,234,860 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 17 | 5,208,920 - 5,234,860 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 17 | 5,112,215 - 5,138,155 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 17 | 5,054,429 - 5,078,861 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 17 | 5,131,553 - 5,155,751 (-) | NCBI | | Celera | | | Cytogenetic Map | 17 | p13.2 | NCBI | | | | | HuRef | 17 | 5,002,250 - 5,028,271 (-) | NCBI | | HuRef | | | CHM1_1 | 17 | 5,121,885 - 5,147,910 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 17 | 5,102,281 - 5,128,266 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Scimp (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 11 | 70,681,758 - 70,703,387 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 11 | 70,681,758 - 70,703,412 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 11 | 70,790,932 - 70,812,561 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 11 | 70,790,932 - 70,812,586 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 11 | 70,604,434 - 70,626,063 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 11 | 70,606,885 - 70,628,782 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 11 | 78,344,966 - 78,367,476 (-) | NCBI | | Celera | | | Cytogenetic Map | 11 | B3 | NCBI | | | | | cM Map | 11 | 43.21 | NCBI | | | | |
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Scimp (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 10 | 56,006,243 - 56,026,357 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 10 | 55,507,646 - 55,527,764 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 10 | 55,507,519 - 55,528,171 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 10 | 60,188,521 - 60,208,528 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 10 | 59,677,041 - 59,697,050 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 10 | 55,176,136 - 55,196,131 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 10 | 57,415,429 - 57,436,412 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 10 | 57,415,832 - 57,436,368 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 10 | 57,162,107 - 57,182,188 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 10 | 57,687,664 - 57,707,493 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 10 | 54,653,780 - 54,674,340 (-) | NCBI | | Celera | | | Cytogenetic Map | 10 | q24 | NCBI | | | | |
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Scimp (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955467 | 10,547,294 - 10,578,387 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955467 | 10,547,706 - 10,578,355 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SCIMP (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 19 | 12,805,039 - 12,845,040 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 17 | 14,788,690 - 14,813,413 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 17 | 5,258,376 - 5,283,747 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 17 | 5,246,916 - 5,271,070 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 17 | 5,247,307 - 5,270,817 (-) | Ensembl | panpan1.1 | | panPan2 | |
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SCIMP (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 5 | 31,534,470 - 31,551,441 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 5 | 31,534,226 - 31,549,175 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 5 | 31,672,061 - 31,690,180 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 5 | 31,637,350 - 31,655,483 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 5 | 31,637,892 - 31,655,929 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 5 | 31,604,024 - 31,622,156 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 5 | 31,563,742 - 31,581,868 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 5 | 31,740,051 - 31,758,169 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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SCIMP (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 12 | 51,773,448 - 51,794,104 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 12 | 51,772,635 - 51,794,107 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 12 | 53,805,596 - 53,826,360 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SCIMP (Chlorocebus sabaeus - green monkey) |
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Scimp (Heterocephalus glaber - naked mole-rat) |
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