Ramp1 (receptor activity modifying protein 1)

Gene: Ramp1 (receptor activity modifying protein 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Ramp1

Name:

receptor activity modifying protein 1

RGD ID:

12620256

Description:

ENCODES a protein that exhibits coreceptor activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); positive regulation of protein binding (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN extracellular space (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

receptor activity-modifying protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	190,399,529 - 190,436,574 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936525	503,070 - 540,281 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936525	503,119 - 540,159 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bethlem Myopathy 1A (ISO)

chromosome 2q37 deletion syndrome (ISO)

D-2-hydroxyglutaric aciduria 1 (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

hereditary spastic paraplegia 30 (ISO)

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenylate cyclase-activating G protein-coupled receptor signaling pathway (IEA)

amylin receptor signaling pathway (IEA)

angiogenesis (IEA)

calcitonin gene-related peptide receptor signaling pathway (IEA)

calcium ion transport (IEA)

cellular response to hormone stimulus (IEA)

G protein-coupled receptor signaling pathway (IEA,ISO)

intracellular protein transport (IEA)

positive regulation of protein binding (ISO)

positive regulation of protein glycosylation (IEA)

protein localization to plasma membrane (IEA)

protein transport (IEA)

receptor internalization (IEA)

regulation of G protein-coupled receptor signaling pathway (IEA)

Cellular Component

cell surface (IEA)

CGRP receptor complex (IEA)

extracellular space (ISO)

membrane (IEA)

plasma membrane (IEA)

receptor complex (IEA)

Molecular Function

amylin receptor activity (IEA)

calcitonin gene-related peptide binding (IEA)

calcitonin gene-related peptide receptor activity (IEA)

coreceptor activity (IEA,ISO)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Ramp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	190,399,529 - 190,436,574 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936525	503,070 - 540,281 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936525	503,119 - 540,159 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAMP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	237,858,880 - 237,912,106 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	237,858,893 - 237,912,106 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	238,768,266 - 238,820,748 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	238,432,926 - 238,485,495 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	238,550,286 - 238,602,746	NCBI
Celera	2	232,481,221 - 232,533,800 (+)	NCBI		Celera
Cytogenetic Map	2	q37.3	NCBI
HuRef	2	230,560,137 - 230,612,778 (+)	NCBI		HuRef
CHM1_1	2	238,773,978 - 238,826,564 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	238,348,771 - 238,402,144 (+)	NCBI		T2T-CHM13v2.0

Ramp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	91,107,544 - 91,152,918 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	91,107,544 - 91,152,918 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	91,179,822 - 91,225,196 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	91,179,822 - 91,225,196 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	93,076,399 - 93,121,773 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	93,010,447 - 93,054,085 (+)	NCBI		MGSCv36	mm8
Celera	1	94,117,772 - 94,162,742 (+)	NCBI		Celera
Cytogenetic Map	1	D	NCBI
cM Map	1	46.08	NCBI

Ramp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	99,213,031 - 99,263,696 (+)	NCBI		GRCr8
mRatBN7.2	9	91,765,481 - 91,816,152 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	91,781,285 - 91,816,151 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	100,192,341 - 100,242,910 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	105,328,109 - 105,378,678 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	103,693,378 - 103,742,967 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	98,313,632 - 98,364,206 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	98,313,632 - 98,364,205 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	97,995,669 - 98,041,719 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	90,402,493 - 90,450,038 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	90,607,261 - 90,654,807 (+)	NCBI
Celera	9	89,308,226 - 89,359,459 (+)	NCBI		Celera
Cytogenetic Map	9	q36	NCBI

Ramp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955542	2,530,349 - 2,564,072 (-)	NCBI	ChiLan1.0	ChiLan1.0

RAMP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	140,492,353 - 140,558,565 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	140,507,320 - 140,573,532 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	125,092,164 - 125,144,032 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	243,942,771 - 243,995,221 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	243,942,771 - 243,995,221 (+)	Ensembl	panpan1.1		panPan2

RAMP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	48,431,136 - 48,466,070 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	48,437,919 - 48,466,070 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	48,924,771 - 48,962,496 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	48,813,868 - 48,851,604 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	48,813,905 - 48,851,525 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	48,689,424 - 48,727,160 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	48,477,911 - 48,515,642 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	48,710,077 - 48,748,033 (+)	NCBI		UU_Cfam_GSD_1.0

RAMP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	137,490,356 - 137,535,553 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	137,490,440 - 137,535,555 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	151,914,286 - 151,944,914 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAMP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	123,873,597 - 123,931,215 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	123,873,351 - 123,931,248 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	75,479,406 - 75,535,761 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ramp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624847	3,169,360 - 3,202,389 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624847	3,169,339 - 3,202,393 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005326381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000035769 ⟹ ENSSTOP00000027430

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936525	503,070 - 540,281 (-)	Ensembl

RefSeq Acc Id:

XM_005326381 ⟹ XP_005326438

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	190,399,529 - 190,436,574 (+)	NCBI
SpeTri2.0	NW_004936525	503,119 - 540,159 (-)	NCBI

Sequence:

show sequence

GCCTGATCGTGCTAACCCTGAGGGTCCCCTGGCGGCCGGCGCGGCAGGTGCTGGCCCAGCAGCC
CAGGAGCTGCAGTGGGCAGGGCTTCGCAGCCGCAGCGTCCTCCCGCCCCCGCCTCCGCCCCCCC
GCCTCCACCCGCGGTGGCGCGCCTCTCAGCCTGGCGCAGTCTGCAGCAGACGGGATCCGCAGGT
CGACTGGTTTGCCGCGCACCATGGCTCCCAGCTTGCGAGGCCTCCCGTGGTGCTGTCTCTGGCT
GTTCCTTGGTTTCGTCGGCCCGGAGTACGCCAGCAGCCACATGGTGGAGGCACAGCAGGTGCAC
CAGGTCGTCCTGGTCTCCGCCTGCCAGGATGCCAACTTTAGCGCCCTCATCCAGAAGCGCTGCC
TGCCCCACTTCCAGGAGGAAATGGAGGCCCTCGGGAAGGATCTGTGGTGCGACTGGGACAAGAC
CGTCCGGAGCTACGGGGAGCTCACTGAGTGCACCAAGGCCGCGGCCGCGAACCTGGACTGCTTC
TGGCCCAACCCGGAGGTGGACAGGTTCTTCGTGGCGATCCACCGCCACTACTTCAGGCTCTGCG
CCATCTCCGGCAGGTCCGTGCAGGACCCAGCCAGGGGCATCCTCTGTCCCTTCATCGTGCTGCC
CATCCTGGTGACCCTGCTGATGACGGCGCTGGTGGTCTGGAGGAGCAAGCGCACCGAGGGCATC
GTGTAGGCGGCCTGGGCCGCCTGCCAAGCGTGGGGGGCTGGGGAGGGAGGGGAGCTCGGGGTGA
CCTCCTCGCACAGGAGGAGCCCACAGGGCTGGGCGGCGGCTCAGCGGGACAGCGCTCGCCTATC
ACGTGCAAGGTCCTGGGTTCCACCCTCAGCACCGCATCAAAGTAAAGAAATAAGATTAAGATTA
AAAAAAAAAAAAAGAGGTGCCCACAGGACTTGAGAGTAATCGTGCTGGTGATTCACCTCGAGCC
TCCGGGAGGGAAGAAGGGACAGCGCTGACTTGTCCCTGGGAAGTGCCACGCTTGGGCCTCTAGC
ATGCATGCAACCCACAATGTCCCCACCTGCATCCCAGGTCCCCCCTTAGCTGTGTTTGTGTACA
TGTGTAGCTTCTGAATAAAACCATCTTCTGAACCGAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005326438	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000027430.1
GenBank Protein	KAG3275632	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005326438 ⟸ XM_005326381
- UniProtKB:	A0A287D1Q1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPSLRGLPWCCLWLFLGFVGPEYASSHMVEAQQVHQVVLVSACQDANFSALIQKRCLPHFQEE MEALGKDLWCDWDKTVRSYGELTECTKAAAANLDCFWPNPEVDRFFVAIHRHYFRLCAISGRSV QDPARGILCPFIVLPILVTLLMTALVVWRSKRTEGIV hide sequence

RefSeq Acc Id:

ENSSTOP00000027430 ⟸ ENSSTOT00000035769

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000029736	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000035769.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.150.510	UniProtKB/TrEMBL
InterPro	RAMP	UniProtKB/TrEMBL
	RAMP_sf	UniProtKB/TrEMBL
NCBI Gene	Ramp1	ENTREZGENE
PANTHER	PTHR14076	UniProtKB/TrEMBL
	RECEPTOR ACTIVITY-MODIFYING PROTEIN 1	UniProtKB/TrEMBL
Pfam	RAMP	UniProtKB/TrEMBL
UniProt	A0A287D1Q1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD