Plppr1 (phospholipid phosphatase related 1) - Rat Genome Database

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Gene: Plppr1 (phospholipid phosphatase related 1) Ictidomys tridecemlineatus
Analyze
Symbol: Plppr1
Name: phospholipid phosphatase related 1
RGD ID: 12619564
Description: ENCODES a protein that exhibits lysophosphatidic acid phosphatase activity (ortholog); INVOLVED IN nervous system development (ortholog); phospholipid dephosphorylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cell projection (inferred); neuron projection (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lipid phosphate phosphatase-related protein type 1; phospholipid phosphatase related 1, transcript variant X1; phospholipid phosphatase related 1, transcript variant X2; phospholipid phosphatase-related protein type 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947172,905,160 - 172,962,064 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365249,452,630 - 9,509,652 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365249,452,541 - 9,509,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Plppr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947172,905,160 - 172,962,064 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365249,452,630 - 9,509,652 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365249,452,541 - 9,509,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLPPR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389101,028,727 - 101,325,135 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9101,028,727 - 101,325,135 (+)EnsemblGRCh38hg38GRCh38
GRCh379103,791,009 - 104,087,417 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369102,830,852 - 103,127,238 (+)NCBINCBI36Build 36hg18NCBI36
Celera974,304,663 - 74,601,009 (+)NCBICelera
Cytogenetic Map9q31.1NCBI
HuRef973,390,121 - 73,686,971 (+)NCBIHuRef
CHM1_19103,937,503 - 104,233,872 (+)NCBICHM1_1
T2T-CHM13v2.09113,200,691 - 113,497,101 (+)NCBIT2T-CHM13v2.0
Plppr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39449,054,986 - 49,340,261 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl449,059,273 - 49,340,259 (+)EnsemblGRCm39 Ensembl
GRCm38449,059,462 - 49,340,261 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl449,059,273 - 49,340,259 (+)EnsemblGRCm38mm10GRCm38
MGSCv37449,072,334 - 49,353,133 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36449,080,562 - 49,361,361 (+)NCBIMGSCv36mm8
MGSCv36447,919,736 - 48,187,380 (+)NCBIMGSCv36mm8
Celera449,084,639 - 49,439,045 (+)NCBICelera
Cytogenetic Map4B1NCBI
cM Map426.27NCBI
Plppr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8568,232,963 - 68,520,784 (+)NCBIGRCr8
mRatBN7.2563,437,457 - 63,725,286 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl563,437,816 - 63,763,835 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx565,414,061 - 65,704,916 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0567,233,390 - 67,524,236 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0567,202,793 - 67,493,622 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0567,852,817 - 67,985,310 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl567,852,180 - 68,139,199 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0572,309,081 - 72,440,687 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4565,982,029 - 66,115,218 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1565,987,141 - 66,120,331 (+)NCBI
Celera563,882,959 - 64,014,387 (-)NCBICelera
Cytogenetic Map5q22NCBI
Plppr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541924,540,860 - 24,668,894 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541924,544,868 - 24,809,419 (-)NCBIChiLan1.0ChiLan1.0
PLPPR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21138,048,495 - 38,341,978 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1938,050,868 - 38,344,351 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0972,230,016 - 72,523,572 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19100,376,355 - 100,518,384 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9100,226,298 - 100,518,384 (+)Ensemblpanpan1.1panPan2
PLPPR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11157,675,433 - 58,073,925 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1157,807,076 - 58,073,566 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1156,118,659 - 56,518,523 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01158,802,852 - 59,209,553 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1158,934,531 - 59,209,549 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11157,300,675 - 57,719,417 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01157,326,861 - 57,734,091 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01158,026,185 - 58,431,030 (+)NCBIUU_Cfam_GSD_1.0
PLPPR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1242,682,812 - 242,970,615 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11242,682,521 - 242,970,622 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21271,376,311 - 271,525,200 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLPPR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11238,127,696 - 38,423,905 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1238,127,767 - 38,423,845 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660354,146,291 - 4,433,880 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plppr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475810,142,022 - 10,440,710 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475810,142,876 - 10,440,706 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000001574   ⟹   ENSSTOP00000001408
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365249,452,630 - 9,509,652 (+)Ensembl
RefSeq Acc Id: XM_005326324   ⟹   XP_005326381
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947172,905,160 - 172,962,064 (+)NCBI
SpeTri2.0NW_0049365249,452,546 - 9,509,640 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021727005   ⟹   XP_021582680
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947172,905,222 - 172,962,064 (+)NCBI
SpeTri2.0NW_0049365249,452,541 - 9,508,757 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005326381 (Get FASTA)   NCBI Sequence Viewer  
  XP_021582680 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001408.3
GenBank Protein KAG3287604 (Get FASTA)   NCBI Sequence Viewer  
  KAG3287605 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005326381   ⟸   XM_005326324
- Peptide Label: isoform X1
- UniProtKB: I3LYU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021582680   ⟸   XM_021727005
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSTOP00000001408   ⟸   ENSSTOT00000001574

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001576 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001574.3 UniProtKB/TrEMBL
Gene3D-CATH Phosphatidic acid phosphatase type 2/haloperoxidase UniProtKB/TrEMBL
InterPro P_Acid_Pase_2/haloperoxi_sf UniProtKB/TrEMBL
  P_Acid_Pase_2/haloperoxidase UniProtKB/TrEMBL
  PLPP UniProtKB/TrEMBL
NCBI Gene Plppr1 ENTREZGENE
PANTHER PTHR10165 UniProtKB/TrEMBL
  PTHR10165:SF41 UniProtKB/TrEMBL
Pfam PAP2 UniProtKB/TrEMBL
SMART acidPPc UniProtKB/TrEMBL
Superfamily-SCOP SSF48317 UniProtKB/TrEMBL
UniProt I3LYU3 ENTREZGENE, UniProtKB/TrEMBL