Clip3 (CAP-Gly domain containing linker protein 3) - Rat Genome Database

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Gene: Clip3 (CAP-Gly domain containing linker protein 3) Ictidomys tridecemlineatus
Analyze
Symbol: Clip3
Name: CAP-Gly domain containing linker protein 3
RGD ID: 12619246
Description: ENCODES a protein that exhibits ganglioside binding (inferred); microtubule binding (inferred); microtubule plus-end binding (inferred); INVOLVED IN cytoplasmic microtubule organization (inferred); fat cell differentiation (inferred); membrane biogenesis (inferred); ASSOCIATED WITH Brugada syndrome 5 (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN cell cortex (inferred); early endosome membrane (inferred); membrane raft (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CAP-Gly domain-containing linker protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,280,101 - 11,293,099 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493692249,894 - 63,158 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493692250,230 - 63,215 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Clip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,280,101 - 11,293,099 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493692249,894 - 63,158 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493692250,230 - 63,215 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLIP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381936,014,660 - 36,032,873 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1936,014,660 - 36,033,343 (-)EnsemblGRCh38hg38GRCh38
GRCh371936,505,562 - 36,523,775 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361941,197,403 - 41,215,615 (-)NCBINCBI36Build 36hg18NCBI36
Celera1933,219,743 - 33,237,958 (-)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1933,011,111 - 33,029,350 (-)NCBIHuRef
CHM1_11936,506,911 - 36,525,148 (-)NCBICHM1_1
T2T-CHM13v2.01938,560,459 - 38,578,672 (-)NCBIT2T-CHM13v2.0
Clip3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39729,991,120 - 30,007,792 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl729,991,153 - 30,007,792 (+)EnsemblGRCm39 Ensembl
GRCm38730,291,695 - 30,308,367 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,291,728 - 30,308,367 (+)EnsemblGRCm38mm10GRCm38
MGSCv37731,076,772 - 31,093,386 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,000,513 - 30,017,127 (+)NCBIMGSCv36mm8
Celera724,888,679 - 24,904,486 (+)NCBICelera
Cytogenetic Map7B1NCBI
cM Map717.37NCBI
Clip3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,674,492 - 94,690,643 (+)NCBIGRCr8
mRatBN7.2185,547,170 - 85,563,187 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,547,206 - 85,563,184 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx190,963,360 - 90,978,071 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,431,540 - 99,446,288 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,721,622 - 92,736,332 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0188,750,453 - 88,766,453 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl190,962,707 - 90,978,907 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,100,103 - 92,116,122 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,238,779 - 85,253,538 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1185,316,889 - 85,331,362 (+)NCBI
Celera179,921,058 - 79,935,799 (+)NCBICelera
Cytogenetic Map1q21NCBI
Clip3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,560,953 - 2,575,291 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,560,953 - 2,575,073 (+)NCBIChiLan1.0ChiLan1.0
CLIP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22042,015,558 - 42,033,698 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,999,198 - 44,017,350 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,932,915 - 32,951,047 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,681,432 - 41,699,680 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,681,432 - 41,699,680 (-)Ensemblpanpan1.1panPan2
CLIP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,657,613 - 116,670,738 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1116,657,657 - 116,669,667 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,063,388 - 116,076,437 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,260,885 - 117,273,887 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,260,889 - 117,273,887 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11116,824,923 - 116,837,922 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,448,500 - 116,461,488 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,503,650 - 117,516,694 (+)NCBIUU_Cfam_GSD_1.0
CLIP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,390,659 - 45,405,655 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1645,390,656 - 45,418,866 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,793,340 - 40,809,756 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLIP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,925,756 - 30,943,736 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,925,623 - 30,944,071 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660738,720,714 - 8,738,541 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clip3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479410,281,130 - 10,295,578 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479410,281,133 - 10,295,580 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000009347   ⟹   ENSSTOP00000008385
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493692249,894 - 63,158 (-)Ensembl
RefSeq Acc Id: XM_005341941   ⟹   XP_005341998
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934911,280,101 - 11,293,099 (-)NCBI
SpeTri2.0NW_00493692250,230 - 63,215 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040279474   ⟹   XP_040135408
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934911,280,101 - 11,293,099 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005341998 (Get FASTA)   NCBI Sequence Viewer  
  XP_040135408 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008385.2
GenBank Protein KAG3255903 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005341998   ⟸   XM_005341941
- Peptide Label: isoform X1
- UniProtKB: I3MDD9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040135408   ⟸   XM_040279474
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000008385   ⟸   ENSSTOT00000009347
Protein Domains
CAP-Gly


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009348 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009347.3 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  2.30.30.190 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  CAP-Gly_dom_sf UniProtKB/TrEMBL
  CAP-Gly_domain UniProtKB/TrEMBL
NCBI Gene Clip3 ENTREZGENE
PANTHER DYNACTIN 1-RELATED MICROTUBULE-BINDING UniProtKB/TrEMBL
  PTHR18916:SF77 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  CAP_GLY UniProtKB/TrEMBL
PROSITE ANK_REPEAT UniProtKB/TrEMBL
  CAP_GLY_1 UniProtKB/TrEMBL
  CAP_GLY_2 UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  CAP_GLY UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
  SSF74924 UniProtKB/TrEMBL
UniProt I3MDD9 ENTREZGENE, UniProtKB/TrEMBL