Ppara (peroxisome proliferator activated receptor alpha)

Gene: Ppara (peroxisome proliferator activated receptor alpha) Ictidomys tridecemlineatus

Analyze

Symbol:

Ppara

Name:

peroxisome proliferator activated receptor alpha

RGD ID:

12618260

Description:

ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); MDM2/MDM4 family protein binding (ortholog); mitogen-activated protein kinase kinase kinase binding (ortholog); INVOLVED IN behavioral response to nicotine (ortholog); cellular response to fructose stimulus (ortholog); enamel mineralization (ortholog); ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); acute kidney tubular necrosis (ortholog); Alcoholic Fatty Liver (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

peroxisome proliferator activated receptor alpha, transcript variant X1; peroxisome proliferator activated receptor alpha, transcript variant X2; peroxisome proliferator activated receptor alpha, transcript variant X3; peroxisome proliferator activated receptor alpha, transcript variant X4; peroxisome proliferator-activated receptor alpha

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	3,665,412 - 3,725,573 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936629	3,672,460 - 3,725,626 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936629	3,672,445 - 3,725,645 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

abdominal obesity-metabolic syndrome (ISO)

acute kidney tubular necrosis (ISO)

Alcoholic Fatty Liver (ISO)

alcoholic hepatitis (ISO)

Alcoholic Liver Diseases (ISO)

Alzheimer's disease (ISO)

Animal Mammary Neoplasms (ISO)

anti-basement membrane glomerulonephritis (ISO)

atopic dermatitis (ISO)

Brain Injuries (ISO)

Cachexia (ISO)

carcinoma (ISO)

Cardiomegaly (ISO)

Chemical and Drug Induced Liver Injury (ISO)

Chronic Hepatitis C (ISO)

colitis (ISO)

coronary artery disease (ISO)

Crohn's disease (ISO)

cystic fibrosis (ISO)

Diabetic Cardiomyopathies (ISO)

disease of cellular proliferation (ISO)

Dyslipidemias (ISO)

end stage renal disease (ISO)

Experimental Autoimmune Encephalomyelitis (ISO)

Experimental Diabetes Mellitus (ISO)

Experimental Mammary Neoplasms (ISO)

familial hyperlipidemia (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

Hepatomegaly (ISO)

hydrocephalus (ISO)

Hyperapobetalipoproteinemia (ISO)

Hyperlipoproteinemias (ISO)

hypertension (ISO)

hypertensive encephalopathy (ISO)

Hypertensive Nephropathy (ISO)

Hypertriglyceridemia (ISO)

hypoglycemia (ISO)

Hypoxia (ISO)

Inflammation (ISO)

Insulin Resistance (ISO)

intellectual disability (ISO)

kidney disease (ISO)

Left Ventricular Hypertrophy (ISO)

lipid metabolism disorder (ISO)

Liver Neoplasms (ISO)

metabolic dysfunction-associated steatotic liver disease (ISO)

Metabolic Syndrome (ISO)

Multiple Organ Failure (ISO)

muscular disease (ISO)

myocardial infarction (ISO)

Myocardial Reperfusion Injury (ISO)

obesity (ISO)

periodontitis (ISO)

Phelan-McDermid syndrome (ISO)

Prenatal Exposure Delayed Effects (ISO)

Prostatic Neoplasms (ISO)

proteinuria (ISO)

Reperfusion Injury (ISO)

schizophrenia (ISO)

Sepsis (ISO)

steatotic liver disease (ISO)

type 1 diabetes mellitus (ISO)

type 2 diabetes mellitus (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

behavioral response to nicotine (ISO)

cell communication (IEA)

cell differentiation (IEA)

cellular response to fructose stimulus (ISO)

cellular response to starvation (IEA)

circadian regulation of gene expression (IEA)

enamel mineralization (IEA,ISO)

epidermis development (IEA,ISO)

fatty acid metabolic process (IEA,ISO)

gluconeogenesis (IEA,ISO)

heart development (ISO)

hormone-mediated signaling pathway (IEA)

intracellular receptor signaling pathway (IEA)

lipoprotein metabolic process (ISO)

negative regulation of appetite (IEA)

negative regulation of blood pressure (ISO)

negative regulation of cell growth involved in cardiac muscle cell development (ISO)

negative regulation of cholesterol storage (IEA)

negative regulation of cytokine production involved in inflammatory response (IEA,ISO)

negative regulation of glycolytic process (IEA)

negative regulation of hepatocyte apoptotic process (IEA,ISO)

negative regulation of inflammatory response (IEA)

negative regulation of leukocyte cell-cell adhesion (IEA)

negative regulation of macrophage derived foam cell differentiation (IEA)

negative regulation of miRNA transcription (IEA)

negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (IEA,ISO)

negative regulation of protein binding (ISO)

negative regulation of reactive oxygen species biosynthetic process (IEA,ISO)

negative regulation of sequestering of triglyceride (IEA)

negative regulation of transcription by RNA polymerase II (IEA)

negative regulation of transforming growth factor beta receptor signaling pathway (IEA,ISO)

nitric oxide metabolic process (ISO)

positive regulation of ATP biosynthetic process (IEA,ISO)

positive regulation of DNA-templated transcription (IEA,ISO)

positive regulation of fatty acid metabolic process (IEA)

positive regulation of fatty acid oxidation (IEA)

positive regulation of gluconeogenesis (IEA,ISO)

positive regulation of lipid biosynthetic process (IEA)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of cellular ketone metabolic process (IEA)

regulation of circadian rhythm (IEA)

regulation of DNA-templated transcription (IEA,ISO)

regulation of fatty acid metabolic process (IEA)

regulation of gene expression (IEA,ISO)

regulation of lipid storage (ISO)

regulation of transcription by RNA polymerase II (IEA)

response to ethanol (ISO)

response to hypoxia (ISO)

response to insulin (ISO)

response to nutrient (ISO)

response to organic cyclic compound (ISO)

steroid hormone mediated signaling pathway (IEA)

wound healing (IEA,ISO)

Cellular Component

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor binding (IEA,ISO)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IEA)

lipid binding (IEA)

MDM2/MDM4 family protein binding (ISO)

metal ion binding (IEA)

mitogen-activated protein kinase kinase kinase binding (ISO)

NFAT protein binding (ISO)

nuclear receptor activity (IEA,ISO)

nuclear steroid receptor activity (IEA)

phosphatase binding (ISO)

protein binding (ISO)

protein domain specific binding (ISO)

protein-containing complex binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

RNA polymerase II-specific DNA-binding transcription factor binding (IEA)

sequence-specific DNA binding (IEA,ISO)

signaling receptor activity (IEA)

transcription coactivator binding (ISO)

ubiquitin conjugating enzyme binding (IEA)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Ppara
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	3,665,412 - 3,725,573 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936629	3,672,460 - 3,725,626 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936629	3,672,445 - 3,725,645 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PPARA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	46,150,526 - 46,243,756 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	46,150,521 - 46,243,755 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	46,546,429 - 46,639,653 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	44,925,163 - 45,018,317 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	44,893,181 - 44,937,060	NCBI
Celera	22	30,453,877 - 30,547,038 (+)	NCBI		Celera
Cytogenetic Map	22	q13.31	ENTREZGENE
HuRef	22	29,490,745 - 29,583,687 (+)	NCBI		HuRef
CHM1_1	22	46,506,503 - 46,598,389 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	46,635,225 - 46,728,457 (+)	NCBI		T2T-CHM13v2.0

Ppara
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	85,619,112 - 85,691,052 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	85,619,184 - 85,687,020 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	85,734,910 - 85,806,851 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	85,734,983 - 85,802,819 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	85,565,994 - 85,637,281 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	85,563,542 - 85,630,585 (+)	NCBI		MGSCv36	mm8
Celera	15	87,868,281 - 87,938,913 (+)	NCBI		Celera
Cytogenetic Map	15	E2	NCBI
cM Map	15	40.42	NCBI

Ppara
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	118,712,261 - 118,780,723 (+)	NCBI		GRCr8
mRatBN7.2	7	116,832,405 - 116,900,878 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	116,832,756 - 116,895,346 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	118,583,352 - 118,646,124 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	120,808,966 - 120,871,752 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	120,778,539 - 120,841,315 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	126,618,872 - 126,687,282 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	126,619,196 - 126,681,752 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	126,330,559 - 126,397,441 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	123,729,774 - 123,807,090 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	123,764,003 - 123,841,320 (+)	NCBI
Celera	7	113,125,201 - 113,187,404 (+)	NCBI		Celera
RH 3.4 Map	7	922.4	RGD
Cytogenetic Map	7	q34	NCBI

Ppara
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	30,307,219 - 30,359,500 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	30,306,563 - 30,366,245 (+)	NCBI	ChiLan1.0	ChiLan1.0

PPARA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	55,981,175 - 56,072,797 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	58,679,171 - 58,770,754 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	22	45,218,364 - 45,302,970 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	45,218,364 - 45,302,970 (+)	Ensembl	panpan1.1		panPan2

PPARA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	19,934,020 - 20,006,096 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	19,934,165 - 20,006,146 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	19,862,969 - 19,928,467 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	20,667,818 - 20,740,885 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	20,668,580 - 20,740,947 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	20,394,544 - 20,460,174 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	20,707,323 - 20,772,988 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	20,889,156 - 20,954,630 (-)	NCBI		UU_Cfam_GSD_1.0

PPARA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	3,300,741 - 3,364,239 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	3,302,755 - 3,321,091 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	470,097 - 488,440 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103223491
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	28,614,892 - 28,709,272 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	28,615,413 - 28,708,763 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666159	3,466 - 79,995 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ppara
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	3,650,922 - 3,701,672 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	3,646,499 - 3,702,553 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005335021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013362704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013362705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013362706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000010955 ⟹ ENSSTOP00000009829

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936629	3,672,460 - 3,725,626 (-)	Ensembl

RefSeq Acc Id:

XM_005335021 ⟹ XP_005335078

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	3,665,412 - 3,725,573 (-)	NCBI
SpeTri2.0	NW_004936629	3,672,445 - 3,725,611 (-)	NCBI

Sequence:

show sequence

TACCCTGGGAGGGAAGGCCCACGGGTGGGGACATCCCGACGTGCCCTGTCCTCCCCCCCTCCGC
GGTGGAGTTTGGGCGTCACCAGCTTTGGGGGCGTCTCCCGGGACACCCTCCCCCCCAGGGATCC
CCAAGGCAAGGTAACCCTAGGCCCAGATAGATCGACCCTGGGGCTAGTGCACCCTGCGGCCGCT
GCCCGACGAGACACAAACGCGATTAGAGTCACCAGCTGCGGACCACGTTTGACGAACAGTTCTC
ACTTTGCTCCCAAACGCAGTTGAAATTAAAGGCCCTACCTGATCGGCAAAGCGACAGTGTGTGG
CAAGACACGCTGAGAACCAAGAACCTGTCACCCCAGGTCAGAGCTGAGGGGTGACCCTCTCCAG
TCAACATGGTGGACACGGAGAGCCCCATCTGCCCCCTCTCTCCGCTCGAGGCTGATGGCCTGGA
AAGCCCGTTATCTGAAGAATTCCTACAAGAGATGGGAAACATCCAAGACATATCTCAGTCCATC
GGTGAGGACAGTTCTGGAAGCTTCAGTTTCACAGAATACCAGTATTTAGGAAGTGGTCCTGGGT
CAGATGGATCCGCCATCACGGACACCCTCTCTCCAGCCTCGAGTCCCTCTTCAGTTAGTTACCC
TGTGGTTCCTGGCAGCGTGGATGAGCCTCCGGGCGGCACACTGAACATCGAGTGCAGGATCTGT
GGGGACAAGGCCTCGGGCTACCACTACGGGGTCCACGCATGTGAAGGCTGCAAGGGTTTCTTTC
GGAGAACCATCCGGCTAAAGCTGGCATATGACAAATGTGACCGCAACTGCAAGATCCAGAAAAA
GAATCGGAATAAGTGCCAGTACTGTCGCTTCCACAAGTGCCTGTCCGTTGGGATGTCACACAAC
GCAATTCGTTTTGGACGAATGCCAAGGTCTGAGAAAGCAAAATTGAAAGCAGAAATTCTTACCT
GTGAACATGATGTAGAAGATTCTGAAACTGCAGATCTCAGGTCTCTTGCCAAGAGAATTTACGA
GGCCTACTTGAAGAACTTTCAAATGAACAAGATCAAAGCCCGAGTCATCCTCGCGGGAAAGACG
GGCCACAATCCACCTTTTGTCATCCATGACATGGAAACGTTGTGCATGGCTGAAAAGACACTTG
TAGCCAAGATGGTGGCCAATGGCATCCAGAACAAGGAGGCCGAGGTCCGCTTCTTCCACTGCTG
CCAGTGCATGTCGGTGGAGACCGTCACAGAGCTCACGGAGTTCGCCAAGGCCATCCCAGGCTTT
GCAAACTTGGACTTGAATGACCAAGTCACTTTGCTCAAATATGGCGTTTATGAGGCCATATTCA
CAATGCTTTCCTCCCTGATGAACAAAGATGGGATGCTGGTGGCATGTGGCAATGGCTTCATAAC
ACGGGAATTCCTGAAAAACCTGAGAAAACCCTTCTGTGACATCATGGAACCCAAGTTTGACTTC
GCCATGAAGTTCAATGCACTGGAGCTGGATGACAGTGACATCTCCCTTTTTGTGGCTGCTATAA
TTTGCTGTGGAGACCGTCCTGGCCTTCTCAACATAGGACACATTGAGAAAATGCAGGAGGGCAT
TGTGCACGTGCTCAAACTCCACCTGCAGAGCAACCATCCGGACGACGCCTTTCTCTTCCCAAAG
CTCCTTCAAAAAATGGTGGACCTCCGGCAGCTGGTCACAGAACACGCACAGCTCGTGCAGACCA
TCAAAAAGACAGAGTCGGATGCAGCTCTCCACCCTTTGCTGCAGGAGATCTACAGGGACATGTA
CTGATCTCTGTGAATGCAC

hide sequence

RefSeq Acc Id:

XM_013362706 ⟹ XP_013218160

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	3,672,549 - 3,725,209 (-)	NCBI
SpeTri2.0	NW_004936629	3,672,585 - 3,725,645 (-)	NCBI

Sequence:

show sequence

CGGGGGACCGCAGCGACGCCGGGTCCTCTGGTTGTACCCTGGGAGGGAAGGCCCACGGGTGGGG
ACATCCCGACGTGCCCTGTCCTCCCCCCCTCCGCGGTGGAGTTTGGGCGTCACCAGCTTTGGGG
GCGTCTCCCGGGACACCCTCCCCCCCAGGGATCCCCAAGGCAAGGTAACCCTAGGCCCAGATAG
ATCGACCCTGGGGCTAGTGCACCCTGCGGCCGCTGCCCGACGAGACACAAACGCGATTAGAGTC
ACCAGCTGCGGACCACGTTTGACGAACAGTTCTCACTTTGCTCCCAAACGCAGTTGAAATTAAA
GGCCCTACCTGATCGGCAAAGCGACAGTGTGTGGCAAGACACGCTGAGAACCAAGAACCTGTCA
CCCCAGGTCAGAGCTGAGGGGTGACCCTCTCCAGTCAACATGGTGGACACGGAGAGCCCCATCT
GCCCCCTCTCTCCGCTCGAGGCTGATGGCCTGGAAAGCCCGTTATCTGAAGAATTCCTACAAGA
GATGGGAAACATCCAAGACATATCTCAGTCCATCGGTGAGGACAGTTCTGGAAGCTTCAGTTTC
ACAGAATACCAGTATTTAGGAAGTGGTCCTGGGTCAGATGGATCCGCCATCACGGACACCCTCT
CTCCAGCCTCGAGTCCCTCTTCAGTTAGTTACCCTGTGGTTCCTGGCAGCGTGGATGAGCCTCC
GGGCGGCACACTGAACATCGAGTGCAGGATCTGTGGGGACAAGGCCTCGGGCTACCACTACGGG
GTCCACGCATGTGAAGGCTGCAAGGGTTTCTTTCGGAGAACCATCCGGCTAAAGCTGGCATATG
ACAAATGTGACCGCAACTGCAAGATCCAGAAAAAGAATCGGAATAAGTGCCAGTACTGTCGCTT
CCACAAGTGCCTGTCCGTTGGGATGTCACACAACGCAATTCGTTTTGGACGAATGCCAAGGTCT
GAGAAAGCAAAATTGAAAGCAGAAATTCTTACCTGTGAACATGATGTAGAAGATTCTGAAACTG
CAGATCTCAGGTCTCTTGCCAAGAGAATTTACGAGGCCTACTTGAAGAACTTTCAAATGAACAA
GATCAAAGCCCGAGTCATCCTCGCGGGAAAGACGGGCCACAATCCACCTTTTGTCATCCATGAC
ATGGAAACGTTGTGCATGGCTGAAAAGACACTTGTAGCCAAGATGGTGGCCAATGGCATCCAGA
ACAAGGAGGCCGAGGTCCGCTTCTTCCACTGCTGCCAGTGCATGTCGGTGGAGACCGTCACAGA
GCTCACGGAGTTCGCCAAGGCCATCCCAGGCTTTGCAAACTTGGACTTGAATGACCAAGTCACT
TTGCTCAAATATGGCGTTTATGAGGCCATATTCACAATGCTTTCCTCCCTGATGAACAAAGATG
GGATGCTGGTGGCATGTGGCAATGGCTTCATAACACGGGAATTCCTGAAAAACCTGAGAAAACC
CTTCTGTGACATCATGGAACCCAAGTTTGACTTCGCCATGAAGTTCAATGCACTGGAGCTGGAT
GACAGTGACATCTCCCTTTTTGTGGCTGCTATAATTTGCTGTGGAGAACAGACCGTCCTGGCCT
TCTCAACATAGGACACATTGAGAAAATGCAGGAGGGCATTGTGCACGTGCTCAAACTCCACCTG
CAGAGCAACCATCCGGACGACGCCTTTCTCTTCCCAAAGCTCCTTC

hide sequence

RefSeq Acc Id:

XM_040276694 ⟹ XP_040132628

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	3,665,412 - 3,701,754 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005335078	(Get FASTA)	NCBI Sequence Viewer
	XP_013218160	(Get FASTA)	NCBI Sequence Viewer
	XP_040132628	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009829.2
GenBank Protein	KAG3290737	(Get FASTA)	NCBI Sequence Viewer
	KAG3290738	(Get FASTA)	NCBI Sequence Viewer
	KAG3290739	(Get FASTA)	NCBI Sequence Viewer
	KAG3290740	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005335078 ⟸ XM_005335021
- Peptide Label:	isoform X1
- UniProtKB:	I3MGF1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVDTESPICPLSPLEADGLESPLSEEFLQEMGNIQDISQSIGEDSSGSFSFTEYQYLGSGPGSD GSAITDTLSPASSPSSVSYPVVPGSVDEPPGGTLNIECRICGDKASGYHYGVHACEGCKGFFRR TIRLKLAYDKCDRNCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCE HDVEDSETADLRSLAKRIYEAYLKNFQMNKIKARVILAGKTGHNPPFVIHDMETLCMAEKTLVA KMVANGIQNKEAEVRFFHCCQCMSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTM LSSLMNKDGMLVACGNGFITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIIC CGDRPGLLNIGHIEKMQEGIVHVLKLHLQSNHPDDAFLFPKLLQKMVDLRQLVTEHAQLVQTIK KTESDAALHPLLQEIYRDMY hide sequence

RefSeq Acc Id:

XP_013218160 ⟸ XM_013362706

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVDTESPICPLSPLEADGLESPLSEEFLQEMGNIQDISQSIGEDSSGSFSFTEYQYLGSGPGSD
GSAITDTLSPASSPSSVSYPVVPGSVDEPPGGTLNIECRICGDKASGYHYGVHACEGCKGFFRR
TIRLKLAYDKCDRNCKIQKKNRNKCQYCRFHKCLSVGMSHNAIRFGRMPRSEKAKLKAEILTCE
HDVEDSETADLRSLAKRIYEAYLKNFQMNKIKARVILAGKTGHNPPFVIHDMETLCMAEKTLVA
KMVANGIQNKEAEVRFFHCCQCMSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFTM
LSSLMNKDGMLVACGNGFITREFLKNLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIIC
CGEQTVLAFST

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RefSeq Acc Id:	XP_040132628 ⟸ XM_040276694
- Peptide Label:	isoform X1
- UniProtKB:	I3MGF1 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000009829 ⟸ ENSSTOT00000010955

Protein Domains

NR LBD Nuclear receptor

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010957	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010955.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.565.10	UniProtKB/TrEMBL
	3.30.50.10	UniProtKB/TrEMBL
InterPro	1Cnucl_rcpt	UniProtKB/TrEMBL
	NHR-like_dom_sf	UniProtKB/TrEMBL
	Nucl_hrmn_rcpt_lig-bd	UniProtKB/TrEMBL
	Nuclear_hrmn_rcpt	UniProtKB/TrEMBL
	PPAR-alpha	UniProtKB/TrEMBL
	Znf_hrmn_rcpt	UniProtKB/TrEMBL
	Znf_NHR/GATA	UniProtKB/TrEMBL
NCBI Gene	Ppara	ENTREZGENE
PANTHER	NUCLEAR HORMONE RECEPTOR	UniProtKB/TrEMBL
	PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR ALPHA	UniProtKB/TrEMBL
Pfam	Hormone_recep	UniProtKB/TrEMBL
	zf-C4	UniProtKB/TrEMBL
PRINTS	PROXISOMEPAR	UniProtKB/TrEMBL
	PROXISOMPAAR	UniProtKB/TrEMBL
	STRDHORMONER	UniProtKB/TrEMBL
	STROIDFINGER	UniProtKB/TrEMBL
PROSITE	NR_LBD	UniProtKB/TrEMBL
	NUCLEAR_REC_DBD_1	UniProtKB/TrEMBL
	NUCLEAR_REC_DBD_2	UniProtKB/TrEMBL
SMART	HOLI	UniProtKB/TrEMBL
	ZnF_C4	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
	SSF48508	UniProtKB/TrEMBL
UniProt	I3MGF1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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