Cfap141 (cilia and flagella associated protein 141) - Rat Genome Database

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Gene: Cfap141 (cilia and flagella associated protein 141) Ictidomys tridecemlineatus
Analyze
Symbol: Cfap141
Name: cilia and flagella associated protein 141 (Ensembl:chromosome unknown C1orf189 homolog)
RGD ID: 12618152
Description: ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C1orf189 homolog; chromosome unknown open reading frame, human C1orf189; CUNH1orf189; LOC101957158; uncharacterized protein C1orf189 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,866,901 - 24,871,783 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,897,637 - 3,902,170 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,897,637 - 3,902,196 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Cfap141
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,866,901 - 24,871,783 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,897,637 - 3,902,170 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,897,637 - 3,902,196 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP141
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381154,199,085 - 154,206,333 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1154,199,085 - 154,206,333 (-)EnsemblGRCh38hg38GRCh38
GRCh371154,171,561 - 154,178,809 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,438,472 - 152,445,433 (-)NCBINCBI36Build 36hg18NCBI36
Celera1127,243,566 - 127,250,527 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1125,534,889 - 125,542,169 (-)NCBIHuRef
CHM1_11155,567,883 - 155,575,150 (-)NCBICHM1_1
T2T-CHM13v2.01153,336,317 - 153,343,543 (-)NCBIT2T-CHM13v2.0
Cfap141
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,970,115 - 89,975,654 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,970,103 - 89,973,182 (+)EnsemblGRCm39 Ensembl
GRCm38390,062,808 - 90,068,347 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,062,796 - 90,068,347 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,866,718 - 89,872,269 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,148,723 - 90,151,804 (+)NCBIMGSCv36mm8
Celera390,099,329 - 90,104,880 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.2NCBI
Cfap141
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,805,290 - 177,808,324 (+)NCBIGRCr8
mRatBN7.22175,507,628 - 175,510,662 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,507,628 - 175,510,662 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,654,063 - 182,657,099 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,676,450 - 180,679,486 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,277,069 - 175,280,109 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,413,966 - 189,417,000 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,413,966 - 189,417,000 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02208,847,004 - 208,850,038 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,287,919 - 182,290,953 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2169,446,524 - 169,449,561 (+)NCBICelera
Cytogenetic Map2q34NCBI
Cfap141
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545752,737 - 754,042 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545752,737 - 754,039 (-)NCBIChiLan1.0ChiLan1.0
CFAP141
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,627,019 - 95,634,582 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,362,248 - 95,369,817 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,554,502 - 129,562,071 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,168,973 - 133,175,964 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,168,973 - 133,175,964 (-)Ensemblpanpan1.1panPan2
CFAP141
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,530,994 - 95,535,407 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,531,141 - 95,534,752 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,448,112 - 104,451,832 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP141
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,615,258 - 9,622,816 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl209,615,288 - 9,622,752 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660388,981,936 - 8,983,530 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005331293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000014580   ⟹   ENSSTOP00000013064
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365803,897,637 - 3,902,170 (-)Ensembl
RefSeq Acc Id: XM_005331293   ⟹   XP_005331350
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505824,866,901 - 24,871,783 (-)NCBI
SpeTri2.0NW_0049365803,897,637 - 3,902,196 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005331350 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013064.3
GenBank Protein KAG3281667 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005331350   ⟸   XM_005331293
- UniProtKB: I3MN71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000013064   ⟸   ENSSTOT00000014580


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014580 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014580.3 UniProtKB/TrEMBL
InterPro DUF4558 UniProtKB/TrEMBL
NCBI Gene LOC101957158 ENTREZGENE
PANTHER C1ORF189 UniProtKB/TrEMBL
  RGD1564171 UniProtKB/TrEMBL
Pfam DUF4558 UniProtKB/TrEMBL
UniProt I3MN71 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-08-08 Cfap141  cilia and flagella associated protein 141  CUNH1orf189  chromosome unknown C1orf189 homolog  Symbol and/or name change 5135510 APPROVED
2017-07-13 CUNH1orf189  chromosome unknown C1orf189 homolog  LOC101957158  chromosome unknown open reading frame, human C1orf189  Symbol and/or name change 5135510 APPROVED