Gys2 (glycogen synthase 2) - Rat Genome Database

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Pathways
Gene: Gys2 (glycogen synthase 2) Ictidomys tridecemlineatus
Analyze
Symbol: Gys2
Name: glycogen synthase 2
RGD ID: 12615103
Description: ENCODES a protein that exhibits alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity (ortholog); D-glucose binding (ortholog); INVOLVED IN glycogen biosynthetic process (ortholog); glycogen metabolic process (ortholog); response to glucose (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; glycogen biosynthetic pathway; glycogen metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); glycogen storage disease (ortholog); Glycogen Storage Disease 0, Liver (ortholog); FOUND IN cell cortex (ortholog); cortical actin cytoskeleton (ortholog); cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycogen [starch] synthase, liver
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494587,333,228 - 87,395,940 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365485,256,437 - 5,309,758 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365485,256,185 - 5,309,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gys2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494587,333,228 - 87,395,940 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365485,256,437 - 5,309,758 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365485,256,185 - 5,309,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GYS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381221,532,577 - 21,604,847 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1221,536,107 - 21,604,917 (-)Ensemblhg38GRCh38
GRCh371221,689,041 - 21,757,781 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361221,580,390 - 21,649,048 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341221,580,391 - 21,648,821NCBI
Celera1226,844,519 - 26,913,106 (-)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1221,463,128 - 21,531,710 (-)NCBIHuRef
CHM1_11221,654,730 - 21,723,356 (-)NCBICHM1_1
T2T-CHM13v2.01221,415,082 - 21,483,766 (-)NCBIT2T-CHM13v2.0
Gys2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396142,368,339 - 142,418,856 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6142,368,339 - 142,418,835 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386142,422,612 - 142,473,130 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6142,422,613 - 142,473,109 (-)Ensemblmm10GRCm38
MGSCv376142,371,133 - 142,421,629 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366142,379,835 - 142,430,174 (-)NCBIMGSCv36mm8
MGSCv366142,999,467 - 143,049,414 (-)NCBIMGSCv36mm8
Celera6145,483,115 - 145,534,322 (-)NCBICelera
Cytogenetic Map6G2NCBI
cM Map674.04NCBI
Gys2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84177,096,063 - 177,137,236 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4177,096,063 - 177,137,236 (-)EnsemblGRCr8
mRatBN7.24175,365,054 - 175,406,228 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4175,365,054 - 175,406,228 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4181,659,898 - 181,701,068 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04177,444,169 - 177,485,337 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04176,064,732 - 176,105,904 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04176,638,632 - 176,679,805 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4176,638,629 - 176,679,815 (-)Ensemblrn6Rnor6.0
Rnor_5.04240,856,037 - 240,896,372 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44179,984,036 - 180,018,819 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4163,897,690 - 163,941,472 (-)NCBICelera
RGSC_v3.14180,229,159 - 180,263,943 (-)NCBI
RH 3.4 Map41028.6RGD
Cytogenetic Map4q44NCBI
Gys2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541317,178,983 - 17,240,213 (-)Ensembl
ChiLan1.0NW_00495541317,182,342 - 17,240,180 (-)NCBIChiLan1.0ChiLan1.0
GYS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21075,197,392 - 75,266,040 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11275,193,790 - 75,262,438 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01264,693,285 - 64,761,855 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11267,297,131 - 67,365,773 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1267,297,131 - 67,365,773 (+)EnsemblpanPan2panpan1.1
GYS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12725,509,833 - 25,558,874 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2725,509,655 - 25,558,844 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2720,792,441 - 20,848,094 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02725,732,712 - 25,788,382 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2725,732,517 - 25,788,145 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12725,531,505 - 25,581,297 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02725,554,947 - 25,604,305 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02720,968,756 - 21,018,506 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
GYS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl551,862,863 - 51,917,757 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1551,862,952 - 51,915,153 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2555,129,103 - 55,191,552 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GYS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11121,400,582 - 21,464,438 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1121,398,869 - 21,463,277 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606913,681,409 - 13,742,874 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gys2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475217,090,563 - 17,143,493 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475217,090,741 - 17,145,823 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Gys2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16172,350 - 214,986 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005328907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000006395   ⟹   ENSSTOP00000005717
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365485,256,437 - 5,309,758 (+)Ensembl
RefSeq Acc Id: XM_005328907   ⟹   XP_005328964
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494587,333,228 - 87,395,940 (+)NCBI
SpeTri2.0NW_0049365485,256,185 - 5,309,758 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328964 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005717.3
GenBank Protein KAG3292287 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005328964   ⟸   XM_005328907
- UniProtKB: I3M7U9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000005717   ⟸   ENSSTOT00000006395


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006383 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006395.3 UniProtKB/TrEMBL
Gene3D-CATH Glycogen Phosphorylase B UniProtKB/TrEMBL
InterPro Glycogen_synth UniProtKB/TrEMBL
KEGG Report iti:101969397 UniProtKB/TrEMBL
NCBI Gene Gys2 ENTREZGENE
PANTHER GLYCOGEN [STARCH] SYNTHASE, LIVER UniProtKB/TrEMBL
  PTHR10176 UniProtKB/TrEMBL
Pfam Glycogen_syn UniProtKB/TrEMBL
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/TrEMBL
UniProt I3M7U9 ENTREZGENE, UniProtKB/TrEMBL