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Gene: Dhx32 (DEAH-box helicase 32 (putative)) Ictidomys tridecemlineatus

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Symbol:

Dhx32

Name:

DEAH-box helicase 32 (putative)

RGD ID:

12614997

Description:

ENCODES a protein that exhibits helicase activity (inferred); RNA binding (inferred); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); Thyroid Neoplasms (ortholog); FOUND IN mitochondrion (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

putative DEAH-box helicase 32 (putative); putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	11,689,867 - 11,730,226 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936486	13,831,072 - 13,871,434 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936486	13,831,072 - 13,871,453 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

distal 10q deletion syndrome (ISO)

Thyroid Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

mitochondrion (ISO)

spliceosomal complex (IEA)

Molecular Function

helicase activity (IEA)

protein binding (ISO)

RNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Dhx32
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	11,689,867 - 11,730,226 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936486	13,831,072 - 13,871,434 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936486	13,831,072 - 13,871,453 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DHX32
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	125,836,337 - 125,896,485 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	125,836,337 - 125,896,436 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	127,524,906 - 127,569,861 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	127,514,899 - 127,559,874 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	127,514,898 - 127,559,874	NCBI
Celera	10	121,300,345 - 121,345,320 (-)	NCBI		Celera
Cytogenetic Map	10	q26.2	NCBI
HuRef	10	121,214,200 - 121,258,933 (-)	NCBI		HuRef
CHM1_1	10	127,806,656 - 127,851,634 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	126,718,811 - 126,779,414 (-)	NCBI		T2T-CHM13v2.0

Dhx32
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	133,322,671 - 133,384,514 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	133,322,671 - 133,384,455 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	133,720,935 - 133,782,785 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	133,720,942 - 133,782,726 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	140,912,618 - 140,968,486 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	133,559,387 - 133,615,146 (-)	NCBI		MGSCv36	mm8
Celera	7	133,525,771 - 133,581,629 (-)	NCBI		Celera
Cytogenetic Map	7	F3	NCBI
cM Map	7	77.32	NCBI

Dhx32
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	197,954,503 - 198,013,779 (-)	NCBI		GRCr8
mRatBN7.2	1	188,524,512 - 188,577,500 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	188,524,512 - 188,577,500 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	196,874,251 - 196,927,331 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	204,050,865 - 204,103,950 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	196,724,385 - 196,777,464 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	205,789,442 - 205,848,727 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	205,789,442 - 205,842,428 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	212,738,509 - 212,790,818 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	193,217,750 - 193,270,794 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	193,367,876 - 193,420,671 (-)	NCBI
Celera	1	186,262,142 - 186,315,221 (-)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

Dhx32
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955477	3,716,832 - 3,786,199 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955477	3,720,988 - 3,778,424 (-)	NCBI	ChiLan1.0	ChiLan1.0

DHX32
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	137,686,870 - 137,746,943 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	137,692,402 - 137,752,263 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	122,397,461 - 122,457,583 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	126,661,521 - 126,706,460 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	126,661,521 - 126,706,460 (-)	Ensembl	panpan1.1		panPan2

DHX32
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	34,999,030 - 35,035,964 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	34,999,204 - 35,035,964 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	35,057,634 - 35,108,844 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	35,556,309 - 35,607,336 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	35,556,309 - 35,607,280 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	35,110,692 - 35,161,949 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	35,102,224 - 35,153,299 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	35,362,110 - 35,413,323 (-)	NCBI		UU_Cfam_GSD_1.0

DHX32
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	135,139,857 - 135,197,316 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	135,143,097 - 135,197,367 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	146,772,533 - 146,826,971 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DHX32
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	118,463,458 - 118,519,482 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	118,458,769 - 118,504,541 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	79,820,912 - 79,877,139 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dhx32
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	21,269,872 - 21,326,855 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	21,264,759 - 21,326,688 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005320764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000022226 ⟹ ENSSTOP00000015315

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936486	13,831,072 - 13,871,434 (-)	Ensembl

RefSeq Acc Id:

XM_005320764 ⟹ XP_005320821

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	11,689,867 - 11,730,226 (+)	NCBI
SpeTri2.0	NW_004936486	13,831,072 - 13,871,453 (-)	NCBI

Sequence:

show sequence

TTTTCCCCTTTTTTCATCACAGTGGGTGTGTGGAGGAAGAAAGACCACTTGCCTGACAATGGGG
GATGAGTTTCTGGTGCACCTTACCAGTTCTTAGCATGGTTTATCGACAGTCATTTGACATGTGA
AGAGTCCTGAAGAGGCCAGCACAGTGGGTCCACAGCAAGAGGAACTGGTGCCGGCTTGAGGAGT
TTCACTTGCCAGAAACCTGGGACTGTGTCTTAGGGACTGGGACATCCCCGTGTGTGTTGGGAGG
CTTTTGAACCCTTTTGCAATGGGTTACTGAGAGGAGAAGCTCGATGGTGAGTGTCGGCTGCCTG
AGCTCCTTGGTGGACAAGATGGAAGAGGAAGAACTGGAGTGTCCAAACTCCACCTCGGAAAAGC
GCTATTTTCCTGAATCCCTAGATTCCAGCGATGGGGATGAGGAAGGGGTCCTGGCCTGTGAGGA
CTTGGAACTGAACCCTTTTGATGGATTGCCATATTCATCGCGTTATTATAAACTTCTGAAAGAA
AGAGAAGAGCTTCCAATATGGAAAGAAAAATACTCCTTTATGGAGAATCTGCTTCAAAATCAAA
TTGTGATCATTTCAGGAGATGCTAAATGTGGCAAGAGCTCTCAGGTTCCTCAGTGGTGTGCTGA
ATATTGCCTTTCCGTTCACTACCAGCATGGGGGCGTGGTGTGCACTCAGGTCCGTAAGCAGACT
GCAGTCCAGCTCGCCCTGAGGGTAGCGGATGAGATGGATGTGAACATCGGGCATGAAGTTGGCT
ACGTGATCCCTTTTGAAAACTGCTGTACCAGTGAAACGATCCTGAGGTACTGTACTGACGACAT
GCTGCAAAGAGAAATGATGTCCAGTCCTTTCTTGGGTAGCTATGGGGTCGTCATCCTGGATGAT
GTCCATGAAAGCAGCATTGCCACCGACGTGTTACTCGGACTTCTCAAGGATGTCTTGCTGGCAA
GACCAGAGCTGAAGCTCATAATTAACTGCTCCCCTCTCCTGGTCAGCAAACTCAGCTCTTACTA
TGGAAACGTGCCTCTCATAGAGGTGAAAAATAAGCACCCTGTGGAAGTTGTGTACCTTAGTGGG
GCTCAAAAGGATTCTTTCCAGTCTATTTTACGCCTTATCTTTGAAATTCACCACTCGGGTGAGG
AGGGCGACATTGTAGTCTTTCTGGCCTGTGAGCAAGATATTGGAAAAGCCTATGAGATTGTCTG
CCGAGAAGGGACTAACTTAAACCCAGACCTTGGAGAACTGGTGGTGGTTCCTTTATACCCCAGA
GAAAAGTGTGCACTATTCAAGCCAATGGATGAAACAGAGAAGAAATGCCAAGTTTATCCAAGAA
GAGTGGTGTTGACCACCAGCTCTGGGGAATCTCTGATCTGGAGCAGCACAGTCAGATTTGTTAT
TGATGTGGGTGTGGAGAGAAGAAGGGTGTACAACCCCAGGATCAGAGCCAACTCCCTCGTCACA
CAGCCCATCAGCCAAAGCCAAGCGGAGATTCGCAAGCAGATTCTCGGGGCATCCTCTTCAGGGA
AACTTTTCTGTCTGTACACTGAAGAATTCGCCTCCAAAGACATGCGGCCACTGAAACCAGCAGA
AATGCAAGAAGCCAACCTAACCAGCATGGTGCTCTTCATGAAGAGGATCGACATCGCGGGCTTG
GGCCACTGCGACTTCATGAACAGGCCAGCACCAGAAAGTTTGATGCAGGCACTAGAAGACTTAG
ATTATCTGGCAGCACTGGATAATGACGGGAATCTTTCTGAATTTGGAATCATCATGTCAGAGTT
TCCTCTGGATCCACAGCTCTCGAAGTCTATTTTGGCGTCCTGTGAATTTGACTGTGTAGATGAA
ATGCTAACCATTGCTGCCATGGTAACAGCTCCTAGCTGCTTTTTACATCTGCCTCACGGAGCTG
AGGCGGCTGCCATGACCTGTTGGGAGACATTTCTACACCCTGAAGGAGATCACTTCACCCTCAT
CAACATTTACAAGGCCTACCAAGACACCTCTCTGAACTCCACCAGTGAGCACTGTGTGGAAAAG
TGGTGTCATGATCACTTCCTCAACTCCTCCGCTCTCAGGATGGCATATGTCATTAGAGCTGAAC
TCTTAGAAATCATCAAGCGAATCGAGCTTCCCTATGCAGAACCTGCTTTTGGCTCCAAGGAAAA
CAACCTCAACATCAAGAAAGCGCTGCTGTCCGGCTACTTCATGCAGATCGCTCGGGATGTGGAT
GGGTCAGGTAACTACTTAATGCTGACACATAAGCAGGTAGCTCAGCTGCATCCCCTGTCTGGTT
ACTCCATCACCAAGAAGATGCCCGAGTGGGTCCTCTTCCATCAGTTCAGCATATCTGAGAACAA
CTACATCAGGGTCACCTCCGCAATCTCTCCTGAACTATTTATGCAGCTGGCACCACAATACTAT
TTCACTAATCTGCCTCCTAGTGAAAGTAAGGATATTCTACAGCAAGTTGTGGATCACCTGTCCC
CCATTTCAACTATAAAGAAGGAACAGAAAATGTGTGAAAAGTGCCCTGAGACTACTGAGCAGAG
ATGCACTCTTCAGTGACTTGCCTGCCAAACAAAGTTCAATAATGATTCCAGAGTGAGCCCACAG
TGGGCCCACTAAAGCCACGTATGAATGCTTAACATGAGGATGGGTGTCCCACCCCACAGGATAG
TCTTGAAAAAATAACACTTTGTATATTATTTTAAAATAAAAAATAGGAGTTTTATTGAATTCTT
CAAATTACTACTCCATGTTTTTCTTCTTGGTGGAAGTTTTTAATCAACCATTCATAATTTGACC
AAAAAAAAAAAGATATTTTGTGAATGTGTCATAGACACATGGAAGAGAACCCTACTTTTGTAGA
GGACTTAAATATGAATAAAATCACGAGTTTTTCAGTAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005320821	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000015315.1
GenBank Protein	KAG3263888	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005320821 ⟸ XM_005320764

- UniProtKB:

I3MT70 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVSVGCLSSLVDKMEEEELECPNSTSEKRYFPESLDSSDGDEEGVLACEDLELNPFDGLPYSSR
YYKLLKEREELPIWKEKYSFMENLLQNQIVIISGDAKCGKSSQVPQWCAEYCLSVHYQHGGVVC
TQVRKQTAVQLALRVADEMDVNIGHEVGYVIPFENCCTSETILRYCTDDMLQREMMSSPFLGSY
GVVILDDVHESSIATDVLLGLLKDVLLARPELKLIINCSPLLVSKLSSYYGNVPLIEVKNKHPV
EVVYLSGAQKDSFQSILRLIFEIHHSGEEGDIVVFLACEQDIGKAYEIVCREGTNLNPDLGELV
VVPLYPREKCALFKPMDETEKKCQVYPRRVVLTTSSGESLIWSSTVRFVIDVGVERRRVYNPRI
RANSLVTQPISQSQAEIRKQILGASSSGKLFCLYTEEFASKDMRPLKPAEMQEANLTSMVLFMK
RIDIAGLGHCDFMNRPAPESLMQALEDLDYLAALDNDGNLSEFGIIMSEFPLDPQLSKSILASC
EFDCVDEMLTIAAMVTAPSCFLHLPHGAEAAAMTCWETFLHPEGDHFTLINIYKAYQDTSLNST
SEHCVEKWCHDHFLNSSALRMAYVIRAELLEIIKRIELPYAEPAFGSKENNLNIKKALLSGYFM
QIARDVDGSGNYLMLTHKQVAQLHPLSGYSITKKMPEWVLFHQFSISENNYIRVTSAISPELFM
QLAPQYYFTNLPPSESKDILQQVVDHLSPISTIKKEQKMCEKCPETTEQRCTLQ

hide sequence

Ensembl Acc Id:

ENSSTOP00000015315 ⟸ ENSSTOT00000022226

Protein Domains

Helicase-associated

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000019851	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000022226.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.120.1080	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	DUF1605	UniProtKB/TrEMBL
	HA2_WH	UniProtKB/TrEMBL
	Helicase-assoc_dom	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
NCBI Gene	Dhx32	ENTREZGENE
PANTHER	ATP-DEPENDENT RNA HELICASE	UniProtKB/TrEMBL
	PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DHX32-RELATED	UniProtKB/TrEMBL
Pfam	HA2	UniProtKB/TrEMBL
	HA2_C	UniProtKB/TrEMBL
	OB_NTP_bind	UniProtKB/TrEMBL
SMART	HA2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	I3MT70	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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