Phf14 (PHD finger protein 14) - Rat Genome Database

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Gene: Phf14 (PHD finger protein 14) Ictidomys tridecemlineatus
Analyze
Symbol: Phf14
Name: PHD finger protein 14
RGD ID: 12614628
Description: ENCODES a protein that exhibits histone binding (inferred); metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN germinal center B cell differentiation (inferred); lung alveolus development (inferred); mesenchymal cell proliferation (inferred); FOUND IN chromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511839,464,583 - 39,648,117 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936761561,443 - 768,792 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936761585,261 - 768,794 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse:




References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Phf14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511839,464,583 - 39,648,117 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936761561,443 - 768,792 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936761585,261 - 768,794 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHF14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38710,973,872 - 11,169,618 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl710,973,336 - 11,169,623 (+)Ensemblhg38GRCh38
GRCh37711,013,499 - 11,209,245 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36710,980,041 - 11,175,770 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34710,786,755 - 10,916,522NCBI
Celera710,988,278 - 11,184,064 (+)NCBICelera
Cytogenetic Map7p21.3NCBI
HuRef710,871,710 - 11,067,466 (+)NCBIHuRef
CHM1_1711,014,060 - 11,209,823 (+)NCBICHM1_1
T2T-CHM13v2.0711,104,462 - 11,300,224 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2711,067,044 - 11,262,833 (+)NCBI
Phf14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39611,907,728 - 12,100,155 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl611,907,808 - 12,081,204 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38611,907,725 - 12,100,156 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl611,907,809 - 12,081,205 (+)Ensemblmm10GRCm38
MGSCv37611,875,881 - 12,031,198 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36611,875,881 - 11,958,012 (+)NCBIMGSCv36mm8
Celera612,018,537 - 12,179,864 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map65.01NCBI
Phf14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8440,975,897 - 41,162,043 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl440,975,439 - 41,162,043 (+)EnsemblGRCr8
mRatBN7.2440,009,691 - 40,195,877 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl440,009,264 - 40,195,885 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx444,996,579 - 45,165,989 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0440,922,781 - 41,092,192 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0439,326,300 - 39,495,708 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0438,241,189 - 38,420,199 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl438,240,728 - 38,420,205 (+)Ensemblrn6Rnor6.0
Rnor_5.0438,078,577 - 38,258,235 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4437,147,379 - 37,253,334 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera435,435,842 - 35,519,141 (+)NCBICelera
Cytogenetic Map4q21NCBI
Phf14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543217,535,224 - 17,697,936 (+)Ensembl
ChiLan1.0NW_00495543217,535,222 - 17,807,106 (+)NCBIChiLan1.0ChiLan1.0
PHF14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2615,767,812 - 15,997,985 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1764,092,529 - 64,322,702 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0711,608,934 - 11,822,039 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1710,972,523 - 11,169,377 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl710,972,503 - 11,169,377 (+)EnsemblpanPan2panpan1.1
PHF14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11425,907,955 - 26,089,666 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1425,914,188 - 26,125,766 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1425,490,268 - 25,706,731 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01425,717,801 - 25,935,411 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1425,717,924 - 25,943,151 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11425,886,137 - 26,102,950 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01425,615,308 - 25,832,273 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01425,869,132 - 26,085,885 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
PHF14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl980,678,207 - 80,866,146 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1980,677,185 - 80,866,160 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2988,596,841 - 88,786,401 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHF14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12147,013,239 - 47,213,030 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2147,013,251 - 47,212,968 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604257,227,594 - 57,432,108 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phf14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248278,122,307 - 8,366,113 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248278,122,179 - 8,337,721 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Phf14
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16126,721,827 - 126,872,461 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000003962   ⟹   ENSSTOP00000003551
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936761585,214 - 768,792 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000035635   ⟹   ENSSTOP00000029972
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936761585,270 - 669,945 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000041402   ⟹   ENSSTOP00000028400
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936761561,443 - 594,087 (+)Ensembl
RefSeq Acc Id: XM_040291561   ⟹   XP_040147495
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511839,473,289 - 39,648,117 (+)NCBI
RefSeq Acc Id: XM_040291562   ⟹   XP_040147496
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511839,473,289 - 39,590,875 (+)NCBI
RefSeq Acc Id: XM_040291563   ⟹   XP_040147497
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511839,464,583 - 39,648,117 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040147495 (Get FASTA)   NCBI Sequence Viewer  
  XP_040147496 (Get FASTA)   NCBI Sequence Viewer  
  XP_040147497 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003551.3
  ENSSTOP00000028400.1
  ENSSTOP00000029972.1
GenBank Protein KAG3277668 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040147497   ⟸   XM_040291563
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040147495   ⟸   XM_040291561
- Peptide Label: isoform X1
- UniProtKB: I3M3C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040147496   ⟸   XM_040291562
- Peptide Label: isoform X2
- UniProtKB: A0A287D8S9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000029972   ⟸   ENSSTOT00000035635
Ensembl Acc Id: ENSSTOP00000003551   ⟸   ENSSTOT00000003962
Ensembl Acc Id: ENSSTOP00000028400   ⟸   ENSSTOT00000041402
Protein Domains
PHD-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003954 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003962.3 UniProtKB/TrEMBL
  ENSSTOT00000035635.1 UniProtKB/TrEMBL
  ENSSTOT00000041402.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.1150 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro EPHD UniProtKB/TrEMBL
  Histone_Mod_Regulator UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Phf14 ENTREZGENE
PANTHER PHD FINGER PROTEIN 14 UniProtKB/TrEMBL
  PHD FINGER PROTEINS UniProtKB/TrEMBL
Pfam PHD UniProtKB/TrEMBL
  PHD_2 UniProtKB/TrEMBL
  zf-HC5HC2H_2 UniProtKB/TrEMBL
PROSITE EPHD UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART PHD UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/TrEMBL
UniProt A0A287D4G0_ICTTR UniProtKB/TrEMBL
  A0A287D8S9 ENTREZGENE, UniProtKB/TrEMBL
  I3M3C2 ENTREZGENE, UniProtKB/TrEMBL