Stxbp2 (syntaxin binding protein 2) - Rat Genome Database
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Gene: Stxbp2 (syntaxin binding protein 2) Ictidomys tridecemlineatus
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Symbol: Stxbp2
Name: syntaxin binding protein 2
RGD ID: 12613237
Description: ENCODES a protein that exhibits syntaxin binding (ortholog); syntaxin-1 binding (ortholog); syntaxin-3 binding (ortholog); INVOLVED IN cellular response to interferon-gamma (ortholog); exocytosis (ortholog); leukocyte mediated cytotoxicity (ortholog); ASSOCIATED WITH blood platelet disease (ortholog); carotid artery thrombosis (ortholog); Familial Hemophagocytic Lymphohistiocytoses (ortholog); FOUND IN apical plasma membrane (ortholog); azurophil granule (ortholog); cytolytic granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: syntaxin-binding protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365884,688,221 - 4,696,075 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Stxbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365884,688,221 - 4,696,075 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STXBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl197,636,881 - 7,647,873 (+)EnsemblGRCh38hg38GRCh38
GRCh38197,637,110 - 7,647,873 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37197,701,996 - 7,712,759 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36197,608,011 - 7,618,707 (+)NCBINCBI36hg18NCBI36
Build 34197,608,020 - 7,618,697NCBI
Celera197,573,175 - 7,583,945 (+)NCBI
Cytogenetic Map19p13.2NCBI
HuRef197,371,707 - 7,382,556 (+)NCBIHuRef
CHM1_1197,701,738 - 7,712,511 (+)NCBICHM1_1
Stxbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3983,680,960 - 3,693,998 (+)NCBIGRCm39mm39
GRCm39 Ensembl83,680,955 - 3,693,644 (+)Ensembl
GRCm3883,630,960 - 3,643,998 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl83,630,955 - 3,643,644 (+)EnsemblGRCm38mm10GRCm38
MGSCv3783,631,160 - 3,643,644 (+)NCBIGRCm37mm9NCBIm37
MGSCv3683,631,150 - 3,642,795 (+)NCBImm8
Celera83,861,489 - 3,873,974 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map81.92NCBI
Stxbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2121,689,364 - 1,701,145 (+)NCBI
Rnor_6.0 Ensembl122,180,150 - 2,191,175 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0122,180,101 - 2,191,863 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0124,342,202 - 4,353,960 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,511,793 - 2,522,818 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1122,511,792 - 2,522,818 (-)NCBI
Celera123,545,180 - 3,556,207 (+)NCBICelera
Cytogenetic Map12p12NCBI
Stxbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,617,621 - 1,624,441 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555631,617,621 - 1,624,441 (-)NCBIChiLan1.0ChiLan1.0
STXBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1197,781,830 - 7,792,038 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl197,781,830 - 7,792,038 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0196,926,833 - 6,937,385 (+)NCBIMhudiblu_PPA_v0panPan3
STXBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2052,413,191 - 52,421,517 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12052,413,174 - 52,421,525 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
STXBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl271,504,569 - 71,513,422 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1271,504,575 - 71,513,446 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,843,349 - 71,852,236 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STXBP2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,123,564 - 7,133,459 (+)NCBI
ChlSab1.1 Ensembl67,123,597 - 7,133,460 (+)Ensembl
Stxbp2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624828718,728 - 725,063 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005332114   ⟹   XP_005332171
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365884,688,221 - 4,696,075 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021730956   ⟹   XP_021586631
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365884,688,340 - 4,696,075 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021730957   ⟹   XP_021586632
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365884,688,239 - 4,696,075 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005332171 (Get FASTA)   NCBI Sequence Viewer  
  XP_021586631 (Get FASTA)   NCBI Sequence Viewer  
  XP_021586632 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005332171   ⟸   XM_005332114
- Peptide Label: isoform X1
- UniProtKB: I3MK13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021586632   ⟸   XM_021730957
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_021586631   ⟸   XM_021730956
- Peptide Label: isoform X2
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012901 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000011571 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012909 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1910 UniProtKB/TrEMBL
  3.40.50.2060 UniProtKB/TrEMBL
  3.90.830.10 UniProtKB/TrEMBL
InterPro Sec-1-like_dom1 UniProtKB/TrEMBL
  Sec-1-like_dom2 UniProtKB/TrEMBL
  Sec-1-like_dom3a UniProtKB/TrEMBL
  Sec1-like UniProtKB/TrEMBL
  Sec1-like_sf UniProtKB/TrEMBL
NCBI Gene Stxbp2 ENTREZGENE
PANTHER PTHR11679 UniProtKB/TrEMBL
Pfam Sec1 UniProtKB/TrEMBL
PIRSF VPS45_Sec1 UniProtKB/TrEMBL
Superfamily-SCOP SSF56815 UniProtKB/TrEMBL
UniProt I3MK13 ENTREZGENE, UniProtKB/TrEMBL