LOC101965209 (cytochrome c oxidase subunit 5B, mitochondrial) - Rat Genome Database

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Gene: LOC101965209 (cytochrome c oxidase subunit 5B, mitochondrial) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101965209
Name: cytochrome c oxidase subunit 5B, mitochondrial
RGD ID: 12613181
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN response to hormone (ortholog); response to peptide hormone (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); genetic disease (ortholog); hypertension (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrial respiratory chain complex IV (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629283,669,097 - 83,670,860 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936744921,888 - 923,803 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101965209
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629283,669,097 - 83,670,860 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936744921,888 - 923,803 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COX5B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38297,646,062 - 97,648,383 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl297,646,062 - 97,648,383 (+)EnsemblGRCh38hg38GRCh38
GRCh37298,262,525 - 98,264,846 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36297,628,953 - 97,631,089 (+)NCBINCBI36Build 36hg18NCBI36
Build 34297,721,038 - 97,723,174NCBI
Celera292,466,522 - 92,468,658 (+)NCBICelera
Cytogenetic Map2q11.2ENTREZGENE
HuRef292,028,218 - 92,030,354 (+)NCBIHuRef
CHM1_1298,266,878 - 98,269,014 (+)NCBICHM1_1
T2T-CHM13v2.0298,104,283 - 98,106,604 (+)NCBIT2T-CHM13v2.0
Cox5b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39136,730,568 - 36,732,469 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl136,730,530 - 36,732,762 (+)EnsemblGRCm39 Ensembl
GRCm38136,691,487 - 36,693,388 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl136,691,449 - 36,693,681 (+)EnsemblGRCm38mm10GRCm38
MGSCv37136,748,332 - 36,750,233 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36136,636,084 - 36,637,931 (+)NCBIMGSCv36mm8
Celera136,478,001 - 36,479,902 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.38NCBI
Cox5b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,417,735 - 46,419,664 (+)NCBIGRCr8
mRatBN7.2938,921,980 - 38,923,806 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl938,921,967 - 38,925,052 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx947,425,120 - 47,426,948 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0952,540,773 - 52,542,599 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0950,822,671 - 50,824,497 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0943,259,706 - 43,262,039 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,259,709 - 43,262,040 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0942,912,214 - 42,914,547 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4935,625,478 - 35,627,304 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1935,626,891 - 35,628,718 (+)NCBI
Celera936,688,358 - 36,690,184 (+)NCBICelera
Cytogenetic Map9q21NCBI
LOC102024993
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554704,321,555 - 4,324,824 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554704,321,555 - 4,323,449 (+)NCBIChiLan1.0ChiLan1.0
LOC100972878
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21230,807,917 - 30,810,670 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A30,810,678 - 30,813,320 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A101,675,232 - 101,677,417 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A98,544,980 - 98,547,502 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A98,544,980 - 98,547,502 (+)Ensemblpanpan1.1panPan2
COX5B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11044,979,654 - 44,991,620 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1044,979,654 - 44,991,703 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1044,906,755 - 44,912,985 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01045,855,804 - 45,867,780 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1045,855,801 - 45,862,133 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11045,567,657 - 45,573,888 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01045,853,736 - 45,859,974 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01046,037,104 - 46,043,336 (-)NCBIUU_Cfam_GSD_1.0
COX5B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl356,629,272 - 56,632,119 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1356,630,297 - 56,632,107 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2359,376,451 - 59,378,263 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COX5B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1141,331,853 - 1,334,144 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041168,772,779 - 168,775,319 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101714602
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247492,837,078 - 2,840,048 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247492,837,030 - 2,838,880 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005339597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010001352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005339597   ⟹   XP_005339654
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629283,669,097 - 83,670,860 (+)NCBI
SpeTri2.0NW_004936744921,888 - 923,803 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005339654 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000009846.2
GenBank Protein KAG3268069 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005339654   ⟸   XM_005339597
- UniProtKB: I3MGG0 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010980 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010975.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.11.10 UniProtKB/TrEMBL
InterPro Cyt_c_oxidase_su5b UniProtKB/TrEMBL
  Cyt_c_oxidase_su5b_sf UniProtKB/TrEMBL
NCBI Gene LOC101965209 ENTREZGENE
PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR10122 UniProtKB/TrEMBL
Pfam COX5B UniProtKB/TrEMBL
PROSITE COX5B_1 UniProtKB/TrEMBL
  COX5B_2 UniProtKB/TrEMBL
Superfamily-SCOP Rubredoxin-like UniProtKB/TrEMBL
UniProt I3MGG0 ENTREZGENE, UniProtKB/TrEMBL