Slc22a17 (solute carrier family 22 member 17) - Rat Genome Database

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Gene: Slc22a17 (solute carrier family 22 member 17) Ictidomys tridecemlineatus
Analyze
Symbol: Slc22a17
Name: solute carrier family 22 member 17
RGD ID: 12612865
Description: ENCODES a protein that exhibits transmembrane signaling receptor activity (ortholog); INVOLVED IN siderophore transport (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); lysinuric protein intolerance (ortholog); FOUND IN organelle membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,359,508 - 35,365,963 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,022,971 - 1,029,672 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,023,026 - 1,029,484 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Slc22a17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,359,508 - 35,365,963 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,022,971 - 1,029,672 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,023,026 - 1,029,484 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381423,346,311 - 23,352,887 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1423,346,314 - 23,352,912 (-)EnsemblGRCh38hg38GRCh38
GRCh371423,815,520 - 23,822,096 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,885,367 - 22,891,920 (-)NCBINCBI36Build 36hg18NCBI36
Build 341422,885,367 - 22,891,319NCBI
Celera143,678,238 - 3,684,791 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,931,941 - 3,938,494 (-)NCBIHuRef
CHM1_11423,814,199 - 23,820,752 (-)NCBICHM1_1
T2T-CHM13v2.01417,547,327 - 17,553,903 (-)NCBIT2T-CHM13v2.0
Slc22a17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,144,184 - 55,154,527 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,143,761 - 55,150,589 (-)EnsemblGRCm39 Ensembl
GRCm381454,906,727 - 54,913,132 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,906,304 - 54,913,132 (-)EnsemblGRCm38mm10GRCm38
MGSCv371455,525,564 - 55,531,969 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361453,860,950 - 53,867,287 (-)NCBIMGSCv36mm8
Celera1452,713,032 - 52,719,445 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1427.99NCBI
Slc22a17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,352,273 - 32,358,780 (-)NCBIGRCr8
mRatBN7.21528,382,285 - 28,389,435 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,382,292 - 28,388,799 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1530,227,996 - 30,234,484 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,375,198 - 31,381,686 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,617,888 - 29,624,383 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,569,824 - 33,576,972 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,569,843 - 33,576,331 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01537,456,770 - 37,463,918 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,008,690 - 33,015,184 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11533,024,383 - 33,030,880 (-)NCBI
Celera1527,960,106 - 27,966,600 (-)NCBICelera
Cytogenetic Map15p13NCBI
SLC22A17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,778,025 - 24,784,606 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,994,518 - 24,001,093 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,165,419 - 4,172,002 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11422,260,079 - 22,266,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1422,260,079 - 22,266,667 (-)Ensemblpanpan1.1panPan2
SLC22A17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,594,572 - 3,600,380 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,594,572 - 3,600,286 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,542,906 - 3,549,350 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,702,403 - 3,708,849 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,702,410 - 3,708,852 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,394,004 - 3,400,445 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,455,276 - 3,461,720 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,717,453 - 3,723,900 (-)NCBIUU_Cfam_GSD_1.0
SLC22A17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,734,871 - 75,741,112 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1775,734,724 - 75,741,115 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,999,765 - 81,006,145 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC22A17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,717,829 - 23,724,439 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605922,693,398 - 22,700,769 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc22a17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,209,864 - 9,220,087 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,210,015 - 9,216,620 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013364525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000029616   ⟹   ENSSTOP00000021760
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367221,023,027 - 1,029,672 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000033590   ⟹   ENSSTOP00000030325
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367221,026,072 - 1,029,137 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000042617   ⟹   ENSSTOP00000024021
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367221,022,971 - 1,029,672 (+)Ensembl
RefSeq Acc Id: XM_013364525   ⟹   XP_013219979
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864035,359,508 - 35,365,963 (-)NCBI
SpeTri2.0NW_0049367221,023,026 - 1,029,484 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013219979 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021760.2
  ENSSTOP00000024021.1
  ENSSTOP00000030325.1
Reference Protein Sequences
RefSeq Acc Id: XP_013219979   ⟸   XM_013364525
- UniProtKB: A0A287D9U1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000030325   ⟸   ENSSTOT00000033590
RefSeq Acc Id: ENSSTOP00000024021   ⟸   ENSSTOT00000042617
RefSeq Acc Id: ENSSTOP00000021760   ⟸   ENSSTOT00000029616
Protein Domains
Major facilitator superfamily (MFS) profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020548 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029616.2 UniProtKB/TrEMBL
  ENSSTOT00000033590.1 UniProtKB/TrEMBL
  ENSSTOT00000042617.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS_dom UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Sugar_transporter_CS UniProtKB/TrEMBL
NCBI Gene Slc22a17 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 22 MEMBER 17 UniProtKB/TrEMBL
Pfam Sugar_tr UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
  SUGAR_TRANSPORT_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A287CRW1_ICTTR UniProtKB/TrEMBL
  A0A287D9U1 ENTREZGENE, UniProtKB/TrEMBL
  I3NBL3_ICTTR UniProtKB/TrEMBL