Rpl23 (ribosomal protein L23) - Rat Genome Database

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Gene: Rpl23 (ribosomal protein L23) Ictidomys tridecemlineatus
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Symbol: Rpl23
Name: ribosomal protein L23
RGD ID: 12612828
Description: ENCODES a protein that exhibits transcription coactivator binding (ortholog); ubiquitin ligase inhibitor activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN cellular response to actinomycin D (ortholog); G1 to G0 transition (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN p53 signaling pathway; ribosome biogenesis pathway; translation pathway; FOUND IN cytoplasm (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L23
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560222,829,881 - 22,834,504 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649014,240,638 - 14,245,194 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649014,240,635 - 14,245,194 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rpl23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560222,829,881 - 22,834,504 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649014,240,638 - 14,245,194 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649014,240,635 - 14,245,194 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381738,847,860 - 38,853,721 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1738,847,860 - 38,853,764 (-)EnsemblGRCh38hg38GRCh38
GRCh371737,004,113 - 37,009,974 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361734,259,847 - 34,263,579 (-)NCBINCBI36Build 36hg18NCBI36
Build 341734,259,864 - 34,263,515NCBI
Celera1733,667,292 - 33,671,022 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1732,801,469 - 32,805,199 (-)NCBIHuRef
CHM1_11737,241,607 - 37,245,337 (-)NCBICHM1_1
T2T-CHM13v2.01739,710,917 - 39,716,772 (-)NCBIT2T-CHM13v2.0
Rpl23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,668,352 - 97,673,265 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1197,668,353 - 97,673,263 (-)EnsemblGRCm39 Ensembl
GRCm381197,777,526 - 97,782,439 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,777,527 - 97,782,437 (-)EnsemblGRCm38mm10GRCm38
MGSCv371197,638,840 - 97,643,753 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361197,593,633 - 97,598,463 (-)NCBIMGSCv36mm8
Celera11107,427,049 - 107,431,962 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.1NCBI
Rpl23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81083,268,223 - 83,272,184 (-)NCBIGRCr8
mRatBN7.21082,771,878 - 82,775,840 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1082,771,538 - 82,775,870 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1087,720,146 - 87,724,104 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01087,218,235 - 87,222,193 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01082,610,820 - 82,614,779 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01085,721,398 - 85,725,359 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1085,721,394 - 85,725,429 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01085,510,909 - 85,514,870 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41086,527,589 - 86,531,549 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1081,527,282 - 81,531,200 (-)NCBICelera
Cytogenetic Map10q31NCBI
Rpl23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,892,880 - 13,898,079 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,892,880 - 13,898,079 (-)NCBIChiLan1.0ChiLan1.0
RPL23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21926,094,678 - 26,098,436 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11727,978,254 - 27,982,002 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01718,417,964 - 18,421,708 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11718,690,682 - 18,694,434 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1718,690,682 - 18,698,253 (+)Ensemblpanpan1.1panPan2
RPL23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1923,397,143 - 23,403,060 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl923,262,282 - 23,403,054 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha922,868,978 - 22,874,894 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0924,191,986 - 24,197,893 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl924,056,665 - 24,197,887 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1922,963,922 - 22,970,049 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0923,224,986 - 23,230,898 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0923,350,498 - 23,356,591 (+)NCBIUU_Cfam_GSD_1.0
RPL23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,279,965 - 23,285,515 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,279,965 - 23,285,538 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPL23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11667,341,370 - 67,345,141 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607738,335,135 - 38,338,860 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247953,874,977 - 3,883,068 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247953,875,181 - 3,880,386 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005321762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000014272   ⟹   ENSSTOP00000012783
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493649014,240,638 - 14,245,194 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000034484   ⟹   ENSSTOP00000029523
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493649014,244,139 - 14,244,607 (-)Ensembl
RefSeq Acc Id: XM_005321762   ⟹   XP_005321819
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560222,829,881 - 22,834,504 (+)NCBI
SpeTri2.0NW_00493649014,240,635 - 14,245,194 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005321819 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012783.2
  ENSSTOP00000029523.1
GenBank Protein KAG3269117 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005321819   ⟸   XM_005321762
- UniProtKB: I3MML5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000029523   ⟸   ENSSTOT00000034484
Ensembl Acc Id: ENSSTOP00000012783   ⟸   ENSSTOT00000014272


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014279 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014272.3 UniProtKB/TrEMBL
  ENSSTOT00000034484.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.150.20 UniProtKB/TrEMBL
InterPro Ribosomal_L14_sf UniProtKB/TrEMBL
  Ribosomal_L14P UniProtKB/TrEMBL
  Ribosomal_L14P_CS UniProtKB/TrEMBL
NCBI Gene Rpl23 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L23 UniProtKB/TrEMBL
  PTHR11761 UniProtKB/TrEMBL
Pfam Ribosomal_L14 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L14 UniProtKB/TrEMBL
SMART Ribosomal_L14 UniProtKB/TrEMBL
Superfamily-SCOP SSF50193 UniProtKB/TrEMBL
UniProt A0A287D7L6_ICTTR UniProtKB/TrEMBL
  I3MML5 ENTREZGENE, UniProtKB/TrEMBL